Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CX3CR1P49238 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CX3CR1P49238 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CX3CR1P49238 AL034346.1-201ENST00000568244 1277 ntBASIC18.71■□□□□ 0.59
CX3CR1P49238 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CX3CR1P49238 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC18.71■□□□□ 0.59
CX3CR1P49238 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC18.71■□□□□ 0.59
CX3CR1P49238 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CX3CR1P49238 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CX3CR1P49238 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CX3CR1P49238 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CX3CR1P49238 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC18.71■□□□□ 0.59
CX3CR1P49238 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC18.71■□□□□ 0.59
CX3CR1P49238 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.58
CX3CR1P49238 TUB-203ENST00000534099 1759 ntTSL 2 BASIC18.7■□□□□ 0.58
CX3CR1P49238 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CX3CR1P49238 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CX3CR1P49238 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
CX3CR1P49238 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CX3CR1P49238 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC18.7■□□□□ 0.58
CX3CR1P49238 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CX3CR1P49238 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CX3CR1P49238 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CX3CR1P49238 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CX3CR1P49238 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CX3CR1P49238 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC18.7■□□□□ 0.58
CX3CR1P49238 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC18.7■□□□□ 0.58
CX3CR1P49238 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CX3CR1P49238 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CX3CR1P49238 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
CX3CR1P49238 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC18.7■□□□□ 0.58
CX3CR1P49238 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC18.7■□□□□ 0.58
CX3CR1P49238 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CX3CR1P49238 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CX3CR1P49238 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CX3CR1P49238 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CX3CR1P49238 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CX3CR1P49238 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC18.69■□□□□ 0.58
CX3CR1P49238 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CX3CR1P49238 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CX3CR1P49238 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CX3CR1P49238 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CX3CR1P49238 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
CX3CR1P49238 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CX3CR1P49238 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC18.69■□□□□ 0.58
CX3CR1P49238 AC104564.3-201ENST00000582367 638 ntBASIC18.69■□□□□ 0.58
CX3CR1P49238 AL136162.1-201ENST00000607711 1078 ntBASIC18.69■□□□□ 0.58
CX3CR1P49238 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CX3CR1P49238 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CX3CR1P49238 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
CX3CR1P49238 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC18.69■□□□□ 0.58
CX3CR1P49238 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CX3CR1P49238 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CX3CR1P49238 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC18.68■□□□□ 0.58
CX3CR1P49238 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC18.68■□□□□ 0.58
CX3CR1P49238 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CX3CR1P49238 SLC25A24-204ENST00000569674 2357 ntBASIC18.68■□□□□ 0.58
CX3CR1P49238 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CX3CR1P49238 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CX3CR1P49238 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CX3CR1P49238 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC18.68■□□□□ 0.58
CX3CR1P49238 AC024257.2-201ENST00000549699 147 ntBASIC18.68■□□□□ 0.58
CX3CR1P49238 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC18.68■□□□□ 0.58
CX3CR1P49238 AP004607.7-201ENST00000527152 1677 ntBASIC18.68■□□□□ 0.58
CX3CR1P49238 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CX3CR1P49238 AC008406.3-201ENST00000620001 1374 ntBASIC18.68■□□□□ 0.58
CX3CR1P49238 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CX3CR1P49238 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
CX3CR1P49238 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
CX3CR1P49238 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CX3CR1P49238 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CX3CR1P49238 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CX3CR1P49238 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC18.67■□□□□ 0.58
CX3CR1P49238 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CX3CR1P49238 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CX3CR1P49238 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CX3CR1P49238 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CX3CR1P49238 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CX3CR1P49238 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC18.67■□□□□ 0.58
CX3CR1P49238 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CX3CR1P49238 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
CX3CR1P49238 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CX3CR1P49238 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CX3CR1P49238 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CX3CR1P49238 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
CX3CR1P49238 BX842568.3-201ENST00000418104 571 ntBASIC18.67■□□□□ 0.58
CX3CR1P49238 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC18.67■□□□□ 0.58
CX3CR1P49238 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CX3CR1P49238 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC18.67■□□□□ 0.58
CX3CR1P49238 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CX3CR1P49238 Z98882.1-201ENST00000622160 2253 ntBASIC18.67■□□□□ 0.58
CX3CR1P49238 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CX3CR1P49238 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CX3CR1P49238 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CX3CR1P49238 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC18.67■□□□□ 0.58
CX3CR1P49238 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC18.66■□□□□ 0.58
CX3CR1P49238 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CX3CR1P49238 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CX3CR1P49238 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC18.66■□□□□ 0.58
CX3CR1P49238 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms