Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMS3P0CW19 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMS3P0CW19 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
LIMS3P0CW19 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMS3P0CW19 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC18.97■□□□□ 0.63
LIMS3P0CW19 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMS3P0CW19 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMS3P0CW19 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
LIMS3P0CW19 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMS3P0CW19 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMS3P0CW19 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMS3P0CW19 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
LIMS3P0CW19 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMS3P0CW19 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMS3P0CW19 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
LIMS3P0CW19 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LIMS3P0CW19 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMS3P0CW19 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
LIMS3P0CW19 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMS3P0CW19 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMS3P0CW19 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMS3P0CW19 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMS3P0CW19 TFPT-201ENST00000391757 774 ntTSL 5 BASIC18.96■□□□□ 0.63
LIMS3P0CW19 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMS3P0CW19 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.96■□□□□ 0.63
LIMS3P0CW19 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC18.96■□□□□ 0.63
LIMS3P0CW19 MTDHP2-201ENST00000601468 714 ntBASIC18.96■□□□□ 0.63
LIMS3P0CW19 AL451085.2-201ENST00000605085 799 ntBASIC18.96■□□□□ 0.63
LIMS3P0CW19 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC18.96■□□□□ 0.63
LIMS3P0CW19 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
LIMS3P0CW19 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC18.96■□□□□ 0.63
LIMS3P0CW19 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
LIMS3P0CW19 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIMS3P0CW19 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC18.95■□□□□ 0.62
LIMS3P0CW19 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC18.95■□□□□ 0.62
LIMS3P0CW19 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LIMS3P0CW19 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIMS3P0CW19 PRTG-204ENST00000561292 833 ntTSL 3 BASIC18.95■□□□□ 0.62
LIMS3P0CW19 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC18.95■□□□□ 0.62
LIMS3P0CW19 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIMS3P0CW19 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
LIMS3P0CW19 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC18.95■□□□□ 0.62
LIMS3P0CW19 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LIMS3P0CW19 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LIMS3P0CW19 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.94■□□□□ 0.62
LIMS3P0CW19 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC18.94■□□□□ 0.62
LIMS3P0CW19 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.94■□□□□ 0.62
LIMS3P0CW19 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
LIMS3P0CW19 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIMS3P0CW19 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.94■□□□□ 0.62
LIMS3P0CW19 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LIMS3P0CW19 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIMS3P0CW19 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIMS3P0CW19 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
LIMS3P0CW19 PARN-205ENST00000539279 1557 ntTSL 2 BASIC18.94■□□□□ 0.62
LIMS3P0CW19 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
LIMS3P0CW19 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LIMS3P0CW19 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIMS3P0CW19 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIMS3P0CW19 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC18.94■□□□□ 0.62
LIMS3P0CW19 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIMS3P0CW19 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC18.94■□□□□ 0.62
LIMS3P0CW19 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC18.94■□□□□ 0.62
LIMS3P0CW19 EXOG-217ENST00000630638 197 ntTSL 5 BASIC18.94■□□□□ 0.62
LIMS3P0CW19 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LIMS3P0CW19 STX4-202ENST00000394998 1498 ntTSL 2 BASIC18.94■□□□□ 0.62
LIMS3P0CW19 AC133637.1-201ENST00000624115 1537 ntBASIC18.94■□□□□ 0.62
LIMS3P0CW19 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LIMS3P0CW19 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIMS3P0CW19 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIMS3P0CW19 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
LIMS3P0CW19 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMS3P0CW19 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LIMS3P0CW19 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
LIMS3P0CW19 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMS3P0CW19 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMS3P0CW19 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC18.93■□□□□ 0.62
LIMS3P0CW19 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMS3P0CW19 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
LIMS3P0CW19 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC18.93■□□□□ 0.62
LIMS3P0CW19 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC18.93■□□□□ 0.62
LIMS3P0CW19 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMS3P0CW19 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC18.93■□□□□ 0.62
LIMS3P0CW19 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMS3P0CW19 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMS3P0CW19 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
LIMS3P0CW19 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMS3P0CW19 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
LIMS3P0CW19 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMS3P0CW19 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMS3P0CW19 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMS3P0CW19 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC18.92■□□□□ 0.62
LIMS3P0CW19 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC18.92■□□□□ 0.62
LIMS3P0CW19 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.92■□□□□ 0.62
LIMS3P0CW19 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMS3P0CW19 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMS3P0CW19 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMS3P0CW19 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMS3P0CW19 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC18.91■□□□□ 0.62
LIMS3P0CW19 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms