Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.9■□□□□ 0.94
SDC3O75056 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SDC3O75056 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SDC3O75056 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SDC3O75056 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC20.9■□□□□ 0.94
SDC3O75056 KRT18P20-201ENST00000548986 1279 ntBASIC20.9■□□□□ 0.94
SDC3O75056 KRT18P6-201ENST00000555540 1265 ntBASIC20.9■□□□□ 0.94
SDC3O75056 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SDC3O75056 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SDC3O75056 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SDC3O75056 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SDC3O75056 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SDC3O75056 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.9■□□□□ 0.94
SDC3O75056 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.9■□□□□ 0.94
SDC3O75056 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
SDC3O75056 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.94
SDC3O75056 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.89■□□□□ 0.93
SDC3O75056 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SDC3O75056 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SDC3O75056 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.89■□□□□ 0.93
SDC3O75056 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC20.89■□□□□ 0.93
SDC3O75056 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.89■□□□□ 0.93
SDC3O75056 APTR-203ENST00000430801 583 ntTSL 5 BASIC20.89■□□□□ 0.93
SDC3O75056 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.89■□□□□ 0.93
SDC3O75056 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
SDC3O75056 AC098934.4-201ENST00000564127 592 ntBASIC20.89■□□□□ 0.93
SDC3O75056 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC20.89■□□□□ 0.93
SDC3O75056 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC20.89■□□□□ 0.93
SDC3O75056 TMEM191A-211ENST00000637163 1067 ntBASIC20.89■□□□□ 0.93
SDC3O75056 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.89■□□□□ 0.93
SDC3O75056 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SDC3O75056 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
SDC3O75056 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SDC3O75056 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.88■□□□□ 0.93
SDC3O75056 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SDC3O75056 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SDC3O75056 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.88■□□□□ 0.93
SDC3O75056 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SDC3O75056 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
SDC3O75056 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SDC3O75056 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SDC3O75056 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SDC3O75056 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
SDC3O75056 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SDC3O75056 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.88■□□□□ 0.93
SDC3O75056 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.88■□□□□ 0.93
SDC3O75056 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SDC3O75056 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SDC3O75056 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SDC3O75056 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SDC3O75056 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SDC3O75056 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
SDC3O75056 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SDC3O75056 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC20.87■□□□□ 0.93
SDC3O75056 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SDC3O75056 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC20.87■□□□□ 0.93
SDC3O75056 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
SDC3O75056 EEF1DP3-203ENST00000566025 782 ntBASIC20.87■□□□□ 0.93
SDC3O75056 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.87■□□□□ 0.93
SDC3O75056 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC20.87■□□□□ 0.93
SDC3O75056 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SDC3O75056 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SDC3O75056 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SDC3O75056 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
SDC3O75056 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.87■□□□□ 0.93
SDC3O75056 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SDC3O75056 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SDC3O75056 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.86■□□□□ 0.93
SDC3O75056 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20.86■□□□□ 0.93
SDC3O75056 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SDC3O75056 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SDC3O75056 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.86■□□□□ 0.93
SDC3O75056 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.86■□□□□ 0.93
SDC3O75056 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.86■□□□□ 0.93
SDC3O75056 MIR4651-201ENST00000582622 73 ntBASIC20.86■□□□□ 0.93
SDC3O75056 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SDC3O75056 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
SDC3O75056 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SDC3O75056 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
SDC3O75056 AC137767.1-201ENST00000602918 1920 ntBASIC20.86■□□□□ 0.93
SDC3O75056 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SDC3O75056 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SDC3O75056 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.85■□□□□ 0.93
SDC3O75056 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.85■□□□□ 0.93
SDC3O75056 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SDC3O75056 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SDC3O75056 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
SDC3O75056 AC069152.1-201ENST00000438030 544 ntBASIC20.85■□□□□ 0.93
SDC3O75056 TERF1P5-201ENST00000477545 1207 ntBASIC20.85■□□□□ 0.93
SDC3O75056 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.85■□□□□ 0.93
SDC3O75056 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SDC3O75056 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC20.85■□□□□ 0.93
SDC3O75056 AC053503.5-201ENST00000601508 636 ntBASIC20.85■□□□□ 0.93
SDC3O75056 AC013268.1-206ENST00000638368 961 ntBASIC20.85■□□□□ 0.93
SDC3O75056 AC112229.1-201ENST00000639295 961 ntBASIC20.85■□□□□ 0.93
SDC3O75056 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SDC3O75056 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SDC3O75056 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.85■□□□□ 0.93
SDC3O75056 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SDC3O75056 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms