Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC21.05■□□□□ 0.96
SNX3O60493 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
SNX3O60493 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC21.05■□□□□ 0.96
SNX3O60493 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SNX3O60493 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC21.05■□□□□ 0.96
SNX3O60493 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SNX3O60493 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC21.05■□□□□ 0.96
SNX3O60493 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SNX3O60493 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
SNX3O60493 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SNX3O60493 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.04■□□□□ 0.96
SNX3O60493 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SNX3O60493 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.04■□□□□ 0.96
SNX3O60493 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SNX3O60493 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
SNX3O60493 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC21.04■□□□□ 0.96
SNX3O60493 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SNX3O60493 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SNX3O60493 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC21.04■□□□□ 0.96
SNX3O60493 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC21.04■□□□□ 0.96
SNX3O60493 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SNX3O60493 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SNX3O60493 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SNX3O60493 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SNX3O60493 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
SNX3O60493 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
SNX3O60493 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SNX3O60493 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SNX3O60493 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SNX3O60493 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SNX3O60493 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SNX3O60493 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SNX3O60493 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
SNX3O60493 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
SNX3O60493 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SNX3O60493 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SNX3O60493 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SNX3O60493 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC21.03■□□□□ 0.96
SNX3O60493 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SNX3O60493 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SNX3O60493 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SNX3O60493 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
SNX3O60493 PARN-205ENST00000539279 1557 ntTSL 2 BASIC21.02■□□□□ 0.96
SNX3O60493 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC21.02■□□□□ 0.96
SNX3O60493 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SNX3O60493 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SNX3O60493 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SNX3O60493 KRT18P24-201ENST00000344739 1156 ntBASIC21.02■□□□□ 0.96
SNX3O60493 MTX2-204ENST00000443241 799 ntTSL 3 BASIC21.02■□□□□ 0.96
SNX3O60493 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
SNX3O60493 SNX5-217ENST00000606557 1087 ntBASIC21.02■□□□□ 0.96
SNX3O60493 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
SNX3O60493 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SNX3O60493 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.95
SNX3O60493 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.95
SNX3O60493 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.95
SNX3O60493 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.95
SNX3O60493 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SNX3O60493 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.01■□□□□ 0.95
SNX3O60493 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SNX3O60493 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC21.01■□□□□ 0.95
SNX3O60493 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.01■□□□□ 0.95
SNX3O60493 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC21.01■□□□□ 0.95
SNX3O60493 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SNX3O60493 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SNX3O60493 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
SNX3O60493 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
SNX3O60493 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC21.01■□□□□ 0.95
SNX3O60493 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC21.01■□□□□ 0.95
SNX3O60493 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
SNX3O60493 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC21.01■□□□□ 0.95
SNX3O60493 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SNX3O60493 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SNX3O60493 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC21■□□□□ 0.95
SNX3O60493 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC21■□□□□ 0.95
SNX3O60493 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SNX3O60493 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SNX3O60493 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SNX3O60493 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SNX3O60493 HYI-210ENST00000486909 905 ntTSL 5 BASIC21■□□□□ 0.95
SNX3O60493 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC21■□□□□ 0.95
SNX3O60493 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
SNX3O60493 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SNX3O60493 MIR7108-201ENST00000614319 87 ntBASIC21■□□□□ 0.95
SNX3O60493 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SNX3O60493 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SNX3O60493 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
SNX3O60493 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SNX3O60493 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SNX3O60493 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC21■□□□□ 0.95
SNX3O60493 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SNX3O60493 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SNX3O60493 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SNX3O60493 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SNX3O60493 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SNX3O60493 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.99■□□□□ 0.95
SNX3O60493 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SNX3O60493 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SNX3O60493 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
SNX3O60493 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms