Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC16.71■□□□□ 0.27
TRAV1-1A0A0B4J248 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV1-1A0A0B4J248 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV1-1A0A0B4J248 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV1-1A0A0B4J248 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
TRAV1-1A0A0B4J248 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV1-1A0A0B4J248 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV1-1A0A0B4J248 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV1-1A0A0B4J248 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
TRAV1-1A0A0B4J248 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC16.71■□□□□ 0.27
TRAV1-1A0A0B4J248 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV1-1A0A0B4J248 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV1-1A0A0B4J248 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
TRAV1-1A0A0B4J248 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC16.71■□□□□ 0.27
TRAV1-1A0A0B4J248 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV1-1A0A0B4J248 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV1-1A0A0B4J248 BX323043.1-201ENST00000641006 1765 ntBASIC16.71■□□□□ 0.27
TRAV1-1A0A0B4J248 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV1-1A0A0B4J248 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.26
TRAV1-1A0A0B4J248 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.26
TRAV1-1A0A0B4J248 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV1-1A0A0B4J248 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
TRAV1-1A0A0B4J248 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC16.7■□□□□ 0.26
TRAV1-1A0A0B4J248 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC16.7■□□□□ 0.26
TRAV1-1A0A0B4J248 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV1-1A0A0B4J248 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV1-1A0A0B4J248 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC16.7■□□□□ 0.26
TRAV1-1A0A0B4J248 SPCS2P3-201ENST00000500401 656 ntBASIC16.7■□□□□ 0.26
TRAV1-1A0A0B4J248 MIR6765-201ENST00000614092 87 ntBASIC16.7■□□□□ 0.26
TRAV1-1A0A0B4J248 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV1-1A0A0B4J248 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV1-1A0A0B4J248 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV1-1A0A0B4J248 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV1-1A0A0B4J248 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV1-1A0A0B4J248 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV1-1A0A0B4J248 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV1-1A0A0B4J248 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV1-1A0A0B4J248 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV1-1A0A0B4J248 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
TRAV1-1A0A0B4J248 AC006128.1-201ENST00000624704 1661 ntBASIC16.69■□□□□ 0.26
TRAV1-1A0A0B4J248 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV1-1A0A0B4J248 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV1-1A0A0B4J248 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV1-1A0A0B4J248 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV1-1A0A0B4J248 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV1-1A0A0B4J248 REST-206ENST00000612429 1376 ntTSL 5 BASIC16.69■□□□□ 0.26
TRAV1-1A0A0B4J248 REST-207ENST00000616975 1370 ntTSL 5 BASIC16.69■□□□□ 0.26
TRAV1-1A0A0B4J248 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV1-1A0A0B4J248 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV1-1A0A0B4J248 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC16.69■□□□□ 0.26
TRAV1-1A0A0B4J248 LSM7-203ENST00000585409 512 ntTSL 2 BASIC16.69■□□□□ 0.26
TRAV1-1A0A0B4J248 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
TRAV1-1A0A0B4J248 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC16.69■□□□□ 0.26
TRAV1-1A0A0B4J248 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
TRAV1-1A0A0B4J248 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV1-1A0A0B4J248 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC16.68■□□□□ 0.26
TRAV1-1A0A0B4J248 SMG8-203ENST00000578922 2178 ntBASIC16.68■□□□□ 0.26
TRAV1-1A0A0B4J248 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV1-1A0A0B4J248 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV1-1A0A0B4J248 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV1-1A0A0B4J248 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV1-1A0A0B4J248 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV1-1A0A0B4J248 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV1-1A0A0B4J248 CEP120-209ENST00000515110 606 ntTSL 3 BASIC16.68■□□□□ 0.26
TRAV1-1A0A0B4J248 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC16.68■□□□□ 0.26
TRAV1-1A0A0B4J248 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV1-1A0A0B4J248 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
TRAV1-1A0A0B4J248 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
TRAV1-1A0A0B4J248 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV1-1A0A0B4J248 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV1-1A0A0B4J248 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV1-1A0A0B4J248 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV1-1A0A0B4J248 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV1-1A0A0B4J248 AC004687.1-201ENST00000579003 1625 ntBASIC16.67■□□□□ 0.26
TRAV1-1A0A0B4J248 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV1-1A0A0B4J248 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV1-1A0A0B4J248 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC16.67■□□□□ 0.26
TRAV1-1A0A0B4J248 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV1-1A0A0B4J248 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC16.67■□□□□ 0.26
TRAV1-1A0A0B4J248 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
TRAV1-1A0A0B4J248 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV1-1A0A0B4J248 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV1-1A0A0B4J248 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV1-1A0A0B4J248 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV1-1A0A0B4J248 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
TRAV1-1A0A0B4J248 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV1-1A0A0B4J248 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC16.66■□□□□ 0.26
TRAV1-1A0A0B4J248 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
TRAV1-1A0A0B4J248 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
TRAV1-1A0A0B4J248 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV1-1A0A0B4J248 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC16.66■□□□□ 0.26
TRAV1-1A0A0B4J248 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV1-1A0A0B4J248 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV1-1A0A0B4J248 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC16.66■□□□□ 0.26
TRAV1-1A0A0B4J248 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV1-1A0A0B4J248 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV1-1A0A0B4J248 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV1-1A0A0B4J248 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV1-1A0A0B4J248 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV1-1A0A0B4J248 ASB1-202ENST00000409297 878 ntTSL 5 BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms