Protein–RNA interactions for Protein: Q9H9S3

SEC61A2, Protein transport protein Sec61 subunit alpha isoform 2, humanhuman

Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A2Q9H9S3 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
SEC61A2Q9H9S3 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SEC61A2Q9H9S3 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SEC61A2Q9H9S3 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SEC61A2Q9H9S3 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.15■□□□□ 0.66
SEC61A2Q9H9S3 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC19.15■□□□□ 0.66
SEC61A2Q9H9S3 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SEC61A2Q9H9S3 AC010141.3-201ENST00000456659 717 ntBASIC19.15■□□□□ 0.66
SEC61A2Q9H9S3 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SEC61A2Q9H9S3 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.15■□□□□ 0.66
SEC61A2Q9H9S3 RASA4CP-201ENST00000424092 1398 ntBASIC19.15■□□□□ 0.66
SEC61A2Q9H9S3 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SEC61A2Q9H9S3 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SEC61A2Q9H9S3 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
SEC61A2Q9H9S3 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.14■□□□□ 0.66
SEC61A2Q9H9S3 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SEC61A2Q9H9S3 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SEC61A2Q9H9S3 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
SEC61A2Q9H9S3 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.14■□□□□ 0.65
SEC61A2Q9H9S3 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.14■□□□□ 0.65
SEC61A2Q9H9S3 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC19.14■□□□□ 0.65
SEC61A2Q9H9S3 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC19.14■□□□□ 0.65
SEC61A2Q9H9S3 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
SEC61A2Q9H9S3 FBXW4P1-201ENST00000426721 2239 ntBASIC19.14■□□□□ 0.65
SEC61A2Q9H9S3 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SEC61A2Q9H9S3 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SEC61A2Q9H9S3 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SEC61A2Q9H9S3 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SEC61A2Q9H9S3 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SEC61A2Q9H9S3 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SEC61A2Q9H9S3 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SEC61A2Q9H9S3 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
SEC61A2Q9H9S3 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SEC61A2Q9H9S3 GUK1-205ENST00000366722 850 ntTSL 3 BASIC19.13■□□□□ 0.65
SEC61A2Q9H9S3 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC19.13■□□□□ 0.65
SEC61A2Q9H9S3 OR7E47P-201ENST00000546390 1422 ntBASIC19.13■□□□□ 0.65
SEC61A2Q9H9S3 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
SEC61A2Q9H9S3 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SEC61A2Q9H9S3 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SEC61A2Q9H9S3 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SEC61A2Q9H9S3 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SEC61A2Q9H9S3 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SEC61A2Q9H9S3 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SEC61A2Q9H9S3 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
SEC61A2Q9H9S3 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.13■□□□□ 0.65
SEC61A2Q9H9S3 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC19.13■□□□□ 0.65
SEC61A2Q9H9S3 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.13■□□□□ 0.65
SEC61A2Q9H9S3 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.12■□□□□ 0.65
SEC61A2Q9H9S3 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SEC61A2Q9H9S3 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC19.12■□□□□ 0.65
SEC61A2Q9H9S3 GRAMD4P2-201ENST00000423297 1097 ntBASIC19.12■□□□□ 0.65
SEC61A2Q9H9S3 AC126544.1-201ENST00000580842 1059 ntBASIC19.12■□□□□ 0.65
SEC61A2Q9H9S3 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
SEC61A2Q9H9S3 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SEC61A2Q9H9S3 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SEC61A2Q9H9S3 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SEC61A2Q9H9S3 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC19.11■□□□□ 0.65
SEC61A2Q9H9S3 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SEC61A2Q9H9S3 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
SEC61A2Q9H9S3 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC19.11■□□□□ 0.65
SEC61A2Q9H9S3 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SEC61A2Q9H9S3 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC19.11■□□□□ 0.65
SEC61A2Q9H9S3 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
SEC61A2Q9H9S3 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC19.11■□□□□ 0.65
SEC61A2Q9H9S3 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SEC61A2Q9H9S3 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
SEC61A2Q9H9S3 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SEC61A2Q9H9S3 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SEC61A2Q9H9S3 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC19.1■□□□□ 0.65
SEC61A2Q9H9S3 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.1■□□□□ 0.65
SEC61A2Q9H9S3 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SEC61A2Q9H9S3 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC19.1■□□□□ 0.65
SEC61A2Q9H9S3 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC19.1■□□□□ 0.65
SEC61A2Q9H9S3 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC19.1■□□□□ 0.65
SEC61A2Q9H9S3 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SEC61A2Q9H9S3 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
SEC61A2Q9H9S3 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.1■□□□□ 0.65
SEC61A2Q9H9S3 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SEC61A2Q9H9S3 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SEC61A2Q9H9S3 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SEC61A2Q9H9S3 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SEC61A2Q9H9S3 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SEC61A2Q9H9S3 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SEC61A2Q9H9S3 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
SEC61A2Q9H9S3 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
SEC61A2Q9H9S3 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC19.1■□□□□ 0.65
SEC61A2Q9H9S3 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
SEC61A2Q9H9S3 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SEC61A2Q9H9S3 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
SEC61A2Q9H9S3 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.09■□□□□ 0.65
SEC61A2Q9H9S3 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SEC61A2Q9H9S3 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SEC61A2Q9H9S3 AP005435.1-201ENST00000529293 1178 ntBASIC19.09■□□□□ 0.65
SEC61A2Q9H9S3 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
SEC61A2Q9H9S3 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC19.09■□□□□ 0.65
SEC61A2Q9H9S3 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SEC61A2Q9H9S3 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SEC61A2Q9H9S3 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC19.09■□□□□ 0.65
SEC61A2Q9H9S3 OXCT2P1-201ENST00000447263 1535 ntBASIC19.09■□□□□ 0.65
SEC61A2Q9H9S3 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms