Protein–RNA interactions for Protein: Q96S90

LYSMD1, LysM and putative peptidoglycan-binding domain-containing protein 1, humanhuman

Predictions only

Length 227 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD1Q96S90 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC21.37■■□□□ 1.01
LYSMD1Q96S90 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC21.37■■□□□ 1.01
LYSMD1Q96S90 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
LYSMD1Q96S90 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.36■■□□□ 1.01
LYSMD1Q96S90 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.36■■□□□ 1.01
LYSMD1Q96S90 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
LYSMD1Q96S90 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
LYSMD1Q96S90 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
LYSMD1Q96S90 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC21.36■■□□□ 1.01
LYSMD1Q96S90 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.36■■□□□ 1.01
LYSMD1Q96S90 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LYSMD1Q96S90 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.36■■□□□ 1.01
LYSMD1Q96S90 AC079140.4-201ENST00000507448 529 ntBASIC21.36■■□□□ 1.01
LYSMD1Q96S90 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC21.36■■□□□ 1.01
LYSMD1Q96S90 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LYSMD1Q96S90 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
LYSMD1Q96S90 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC21.36■■□□□ 1.01
LYSMD1Q96S90 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.36■■□□□ 1.01
LYSMD1Q96S90 EP400NL-214ENST00000641289 2402 ntBASIC21.36■■□□□ 1.01
LYSMD1Q96S90 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
LYSMD1Q96S90 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LYSMD1Q96S90 AC026471.6-201ENST00000622954 1905 ntBASIC21.35■■□□□ 1.01
LYSMD1Q96S90 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC21.35■■□□□ 1.01
LYSMD1Q96S90 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.35■■□□□ 1.01
LYSMD1Q96S90 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC21.35■■□□□ 1.01
LYSMD1Q96S90 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LYSMD1Q96S90 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC21.35■■□□□ 1.01
LYSMD1Q96S90 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC21.35■■□□□ 1.01
LYSMD1Q96S90 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC21.35■■□□□ 1.01
LYSMD1Q96S90 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC21.35■■□□□ 1.01
LYSMD1Q96S90 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
LYSMD1Q96S90 AC003102.1-202ENST00000563394 1796 ntBASIC21.35■■□□□ 1.01
LYSMD1Q96S90 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
LYSMD1Q96S90 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
LYSMD1Q96S90 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
LYSMD1Q96S90 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
LYSMD1Q96S90 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LYSMD1Q96S90 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
LYSMD1Q96S90 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
LYSMD1Q96S90 KRT87P-202ENST00000534226 1464 ntBASIC21.34■■□□□ 1.01
LYSMD1Q96S90 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LYSMD1Q96S90 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LYSMD1Q96S90 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
LYSMD1Q96S90 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC21.34■■□□□ 1.01
LYSMD1Q96S90 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
LYSMD1Q96S90 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
LYSMD1Q96S90 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC21.34■■□□□ 1.01
LYSMD1Q96S90 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.34■■□□□ 1.01
LYSMD1Q96S90 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LYSMD1Q96S90 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LYSMD1Q96S90 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
LYSMD1Q96S90 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
LYSMD1Q96S90 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC21.33■■□□□ 1.01
LYSMD1Q96S90 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
LYSMD1Q96S90 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.33■■□□□ 1.01
LYSMD1Q96S90 GOLGA2P6-201ENST00000340929 2049 ntBASIC21.33■■□□□ 1.01
LYSMD1Q96S90 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
LYSMD1Q96S90 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
LYSMD1Q96S90 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC21.33■■□□□ 1.01
LYSMD1Q96S90 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
LYSMD1Q96S90 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
LYSMD1Q96S90 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
LYSMD1Q96S90 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
LYSMD1Q96S90 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC21.33■■□□□ 1
LYSMD1Q96S90 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
LYSMD1Q96S90 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
LYSMD1Q96S90 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
LYSMD1Q96S90 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.32■■□□□ 1
LYSMD1Q96S90 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC21.32■■□□□ 1
LYSMD1Q96S90 ANKRD20A6P-201ENST00000618763 204 ntBASIC21.32■■□□□ 1
LYSMD1Q96S90 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC21.32■■□□□ 1
LYSMD1Q96S90 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LYSMD1Q96S90 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.32■■□□□ 1
LYSMD1Q96S90 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.32■■□□□ 1
LYSMD1Q96S90 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
LYSMD1Q96S90 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC21.32■■□□□ 1
LYSMD1Q96S90 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21.31■■□□□ 1
LYSMD1Q96S90 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC21.31■■□□□ 1
LYSMD1Q96S90 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC21.31■■□□□ 1
LYSMD1Q96S90 EEF1DP3-203ENST00000566025 782 ntBASIC21.31■■□□□ 1
LYSMD1Q96S90 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
LYSMD1Q96S90 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC21.31■■□□□ 1
LYSMD1Q96S90 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC21.31■■□□□ 1
LYSMD1Q96S90 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
LYSMD1Q96S90 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC21.31■■□□□ 1
LYSMD1Q96S90 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
LYSMD1Q96S90 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
LYSMD1Q96S90 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LYSMD1Q96S90 AP004607.4-201ENST00000530158 1459 ntBASIC21.31■■□□□ 1
LYSMD1Q96S90 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.31■■□□□ 1
LYSMD1Q96S90 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC21.31■■□□□ 1
LYSMD1Q96S90 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.31■■□□□ 1
LYSMD1Q96S90 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
LYSMD1Q96S90 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
LYSMD1Q96S90 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
LYSMD1Q96S90 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.3■■□□□ 1
LYSMD1Q96S90 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
LYSMD1Q96S90 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
LYSMD1Q96S90 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC21.3■■□□□ 1
LYSMD1Q96S90 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms