Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
VPS13AQ96RL7 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
VPS13AQ96RL7 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC21.44■■□□□ 1.02
VPS13AQ96RL7 OR10C1-204ENST00000622521 1039 ntBASIC21.44■■□□□ 1.02
VPS13AQ96RL7 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC21.44■■□□□ 1.02
VPS13AQ96RL7 AC055733.4-201ENST00000638462 1354 ntBASIC21.44■■□□□ 1.02
VPS13AQ96RL7 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
VPS13AQ96RL7 PPOX-219ENST00000544598 813 ntTSL 2 BASIC21.44■■□□□ 1.02
VPS13AQ96RL7 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC21.44■■□□□ 1.02
VPS13AQ96RL7 AC008403.3-201ENST00000598924 454 ntBASIC21.44■■□□□ 1.02
VPS13AQ96RL7 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
VPS13AQ96RL7 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC21.43■■□□□ 1.02
VPS13AQ96RL7 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.43■■□□□ 1.02
VPS13AQ96RL7 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
VPS13AQ96RL7 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
VPS13AQ96RL7 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
VPS13AQ96RL7 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
VPS13AQ96RL7 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC21.43■■□□□ 1.02
VPS13AQ96RL7 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
VPS13AQ96RL7 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
VPS13AQ96RL7 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
VPS13AQ96RL7 SNORA78-201ENST00000459373 127 ntBASIC21.42■■□□□ 1.02
VPS13AQ96RL7 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
VPS13AQ96RL7 AC008694.1-202ENST00000636953 945 ntBASIC21.42■■□□□ 1.02
VPS13AQ96RL7 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
VPS13AQ96RL7 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC21.42■■□□□ 1.02
VPS13AQ96RL7 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
VPS13AQ96RL7 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
VPS13AQ96RL7 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
VPS13AQ96RL7 BMP1-204ENST00000397814 836 ntTSL 4 BASIC21.42■■□□□ 1.02
VPS13AQ96RL7 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
VPS13AQ96RL7 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC21.42■■□□□ 1.02
VPS13AQ96RL7 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
VPS13AQ96RL7 AC010141.3-201ENST00000456659 717 ntBASIC21.42■■□□□ 1.02
VPS13AQ96RL7 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
VPS13AQ96RL7 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC21.42■■□□□ 1.02
VPS13AQ96RL7 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
VPS13AQ96RL7 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
VPS13AQ96RL7 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
VPS13AQ96RL7 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
VPS13AQ96RL7 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC21.42■■□□□ 1.02
VPS13AQ96RL7 AL512625.2-201ENST00000417533 625 ntBASIC21.42■■□□□ 1.02
VPS13AQ96RL7 AC097658.1-201ENST00000475555 843 ntBASIC21.42■■□□□ 1.02
VPS13AQ96RL7 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.42■■□□□ 1.02
VPS13AQ96RL7 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
VPS13AQ96RL7 ABCB10P4-201ENST00000566803 2184 ntBASIC21.41■■□□□ 1.02
VPS13AQ96RL7 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC21.41■■□□□ 1.02
VPS13AQ96RL7 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC21.41■■□□□ 1.02
VPS13AQ96RL7 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC21.41■■□□□ 1.02
VPS13AQ96RL7 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC21.4■■□□□ 1.02
VPS13AQ96RL7 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
VPS13AQ96RL7 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC21.4■■□□□ 1.02
VPS13AQ96RL7 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VPS13AQ96RL7 TERF1P5-201ENST00000477545 1207 ntBASIC21.4■■□□□ 1.02
VPS13AQ96RL7 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC21.4■■□□□ 1.02
VPS13AQ96RL7 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
VPS13AQ96RL7 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
VPS13AQ96RL7 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VPS13AQ96RL7 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
VPS13AQ96RL7 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC21.4■■□□□ 1.02
VPS13AQ96RL7 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC21.4■■□□□ 1.02
VPS13AQ96RL7 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
VPS13AQ96RL7 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VPS13AQ96RL7 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VPS13AQ96RL7 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
VPS13AQ96RL7 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.02
VPS13AQ96RL7 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
VPS13AQ96RL7 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
VPS13AQ96RL7 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC21.39■■□□□ 1.02
VPS13AQ96RL7 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
VPS13AQ96RL7 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
VPS13AQ96RL7 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
VPS13AQ96RL7 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC21.39■■□□□ 1.01
VPS13AQ96RL7 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC21.38■■□□□ 1.01
VPS13AQ96RL7 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
VPS13AQ96RL7 REXO2-216ENST00000544196 452 ntTSL 3 BASIC21.38■■□□□ 1.01
VPS13AQ96RL7 AC016405.3-201ENST00000607710 860 ntBASIC21.38■■□□□ 1.01
VPS13AQ96RL7 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC21.38■■□□□ 1.01
VPS13AQ96RL7 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
VPS13AQ96RL7 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VPS13AQ96RL7 DUSP8P3-201ENST00000399571 1760 ntBASIC21.38■■□□□ 1.01
VPS13AQ96RL7 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
VPS13AQ96RL7 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.38■■□□□ 1.01
VPS13AQ96RL7 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VPS13AQ96RL7 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VPS13AQ96RL7 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC21.38■■□□□ 1.01
VPS13AQ96RL7 AC097493.4-201ENST00000641197 219 ntBASIC21.38■■□□□ 1.01
VPS13AQ96RL7 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.37■■□□□ 1.01
VPS13AQ96RL7 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
VPS13AQ96RL7 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC21.37■■□□□ 1.01
VPS13AQ96RL7 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC21.37■■□□□ 1.01
VPS13AQ96RL7 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.37■■□□□ 1.01
VPS13AQ96RL7 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS13AQ96RL7 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
VPS13AQ96RL7 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
VPS13AQ96RL7 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS13AQ96RL7 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS13AQ96RL7 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
VPS13AQ96RL7 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC21.37■■□□□ 1.01
VPS13AQ96RL7 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms