Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 PXK-203ENST00000383715 1756 ntTSL 5 BASIC21.25■□□□□ 0.99
VPS35Q96QK1 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
VPS35Q96QK1 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.25■□□□□ 0.99
VPS35Q96QK1 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS35Q96QK1 AP006587.3-201ENST00000525742 1516 ntBASIC21.24■□□□□ 0.99
VPS35Q96QK1 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.24■□□□□ 0.99
VPS35Q96QK1 CLDN5-201ENST00000403084 2357 ntBASIC21.24■□□□□ 0.99
VPS35Q96QK1 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS35Q96QK1 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
VPS35Q96QK1 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
VPS35Q96QK1 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS35Q96QK1 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS35Q96QK1 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS35Q96QK1 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
VPS35Q96QK1 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
VPS35Q96QK1 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC21.24■□□□□ 0.99
VPS35Q96QK1 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
VPS35Q96QK1 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC21.24■□□□□ 0.99
VPS35Q96QK1 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC21.24■□□□□ 0.99
VPS35Q96QK1 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC21.24■□□□□ 0.99
VPS35Q96QK1 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
VPS35Q96QK1 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS35Q96QK1 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
VPS35Q96QK1 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS35Q96QK1 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS35Q96QK1 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.23■□□□□ 0.99
VPS35Q96QK1 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
VPS35Q96QK1 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
VPS35Q96QK1 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
VPS35Q96QK1 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC21.23■□□□□ 0.99
VPS35Q96QK1 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.23■□□□□ 0.99
VPS35Q96QK1 KRT18P14-201ENST00000534205 1250 ntBASIC21.23■□□□□ 0.99
VPS35Q96QK1 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC21.23■□□□□ 0.99
VPS35Q96QK1 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.23■□□□□ 0.99
VPS35Q96QK1 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS35Q96QK1 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS35Q96QK1 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS35Q96QK1 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS35Q96QK1 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS35Q96QK1 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS35Q96QK1 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
VPS35Q96QK1 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC21.22■□□□□ 0.99
VPS35Q96QK1 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VPS35Q96QK1 AC034268.1-201ENST00000441047 882 ntBASIC21.22■□□□□ 0.99
VPS35Q96QK1 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC21.22■□□□□ 0.99
VPS35Q96QK1 MIR5787-201ENST00000611784 55 ntBASIC21.22■□□□□ 0.99
VPS35Q96QK1 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC21.22■□□□□ 0.99
VPS35Q96QK1 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VPS35Q96QK1 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
VPS35Q96QK1 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
VPS35Q96QK1 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VPS35Q96QK1 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VPS35Q96QK1 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
VPS35Q96QK1 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC21.22■□□□□ 0.99
VPS35Q96QK1 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
VPS35Q96QK1 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
VPS35Q96QK1 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
VPS35Q96QK1 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
VPS35Q96QK1 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
VPS35Q96QK1 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
VPS35Q96QK1 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
VPS35Q96QK1 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC21.21■□□□□ 0.99
VPS35Q96QK1 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC21.21■□□□□ 0.99
VPS35Q96QK1 DUX4L2-201ENST00000561772 1275 ntBASIC21.21■□□□□ 0.99
VPS35Q96QK1 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC21.21■□□□□ 0.99
VPS35Q96QK1 DUX4L6-201ENST00000626483 1275 ntBASIC21.21■□□□□ 0.99
VPS35Q96QK1 DUX4L1-201ENST00000627662 1275 ntBASIC21.21■□□□□ 0.99
VPS35Q96QK1 DUX4L8-201ENST00000629013 1275 ntBASIC21.21■□□□□ 0.99
VPS35Q96QK1 DUX4L3-201ENST00000630187 1275 ntBASIC21.21■□□□□ 0.99
VPS35Q96QK1 DUX4L7-201ENST00000630678 1275 ntBASIC21.21■□□□□ 0.99
VPS35Q96QK1 DUX4L5-201ENST00000630834 1275 ntBASIC21.21■□□□□ 0.99
VPS35Q96QK1 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VPS35Q96QK1 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.21■□□□□ 0.99
VPS35Q96QK1 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.21■□□□□ 0.99
VPS35Q96QK1 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VPS35Q96QK1 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
VPS35Q96QK1 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.99
VPS35Q96QK1 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC21.2■□□□□ 0.98
VPS35Q96QK1 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VPS35Q96QK1 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
VPS35Q96QK1 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
VPS35Q96QK1 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VPS35Q96QK1 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VPS35Q96QK1 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VPS35Q96QK1 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VPS35Q96QK1 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VPS35Q96QK1 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VPS35Q96QK1 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC21.19■□□□□ 0.98
VPS35Q96QK1 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VPS35Q96QK1 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VPS35Q96QK1 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC21.19■□□□□ 0.98
VPS35Q96QK1 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VPS35Q96QK1 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC21.19■□□□□ 0.98
VPS35Q96QK1 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC21.19■□□□□ 0.98
VPS35Q96QK1 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.19■□□□□ 0.98
VPS35Q96QK1 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
VPS35Q96QK1 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VPS35Q96QK1 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VPS35Q96QK1 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VPS35Q96QK1 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms