Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
ECHDC3Q96DC8 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC21.49■■□□□ 1.03
ECHDC3Q96DC8 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
ECHDC3Q96DC8 AC004854.2-201ENST00000608450 1441 ntBASIC21.49■■□□□ 1.03
ECHDC3Q96DC8 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
ECHDC3Q96DC8 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.49■■□□□ 1.03
ECHDC3Q96DC8 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
ECHDC3Q96DC8 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC21.49■■□□□ 1.03
ECHDC3Q96DC8 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
ECHDC3Q96DC8 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC21.49■■□□□ 1.03
ECHDC3Q96DC8 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC21.49■■□□□ 1.03
ECHDC3Q96DC8 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
ECHDC3Q96DC8 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
ECHDC3Q96DC8 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
ECHDC3Q96DC8 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
ECHDC3Q96DC8 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
ECHDC3Q96DC8 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
ECHDC3Q96DC8 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
ECHDC3Q96DC8 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
ECHDC3Q96DC8 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
ECHDC3Q96DC8 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC21.48■■□□□ 1.03
ECHDC3Q96DC8 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
ECHDC3Q96DC8 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
ECHDC3Q96DC8 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC21.48■■□□□ 1.03
ECHDC3Q96DC8 AC104564.3-201ENST00000582367 638 ntBASIC21.48■■□□□ 1.03
ECHDC3Q96DC8 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC21.48■■□□□ 1.03
ECHDC3Q96DC8 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC21.48■■□□□ 1.03
ECHDC3Q96DC8 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
ECHDC3Q96DC8 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
ECHDC3Q96DC8 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
ECHDC3Q96DC8 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
ECHDC3Q96DC8 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC21.48■■□□□ 1.03
ECHDC3Q96DC8 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC21.48■■□□□ 1.03
ECHDC3Q96DC8 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
ECHDC3Q96DC8 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
ECHDC3Q96DC8 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
ECHDC3Q96DC8 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
ECHDC3Q96DC8 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
ECHDC3Q96DC8 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21.47■■□□□ 1.03
ECHDC3Q96DC8 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
ECHDC3Q96DC8 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC21.47■■□□□ 1.03
ECHDC3Q96DC8 PARL-206ENST00000435888 1098 ntTSL 5 BASIC21.47■■□□□ 1.03
ECHDC3Q96DC8 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC21.47■■□□□ 1.03
ECHDC3Q96DC8 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
ECHDC3Q96DC8 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.47■■□□□ 1.03
ECHDC3Q96DC8 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC21.47■■□□□ 1.03
ECHDC3Q96DC8 GALNS-213ENST00000569433 723 ntTSL 3 BASIC21.47■■□□□ 1.03
ECHDC3Q96DC8 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC21.47■■□□□ 1.03
ECHDC3Q96DC8 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
ECHDC3Q96DC8 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.47■■□□□ 1.03
ECHDC3Q96DC8 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
ECHDC3Q96DC8 AL117328.2-201ENST00000624617 1940 ntBASIC21.47■■□□□ 1.03
ECHDC3Q96DC8 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
ECHDC3Q96DC8 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.47■■□□□ 1.03
ECHDC3Q96DC8 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
ECHDC3Q96DC8 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
ECHDC3Q96DC8 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
ECHDC3Q96DC8 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
ECHDC3Q96DC8 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
ECHDC3Q96DC8 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
ECHDC3Q96DC8 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
ECHDC3Q96DC8 FAM99A-202ENST00000538190 1989 ntBASIC21.46■■□□□ 1.03
ECHDC3Q96DC8 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
ECHDC3Q96DC8 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.46■■□□□ 1.03
ECHDC3Q96DC8 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
ECHDC3Q96DC8 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC21.46■■□□□ 1.03
ECHDC3Q96DC8 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
ECHDC3Q96DC8 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
ECHDC3Q96DC8 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
ECHDC3Q96DC8 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
ECHDC3Q96DC8 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
ECHDC3Q96DC8 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC21.45■■□□□ 1.02
ECHDC3Q96DC8 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC21.45■■□□□ 1.02
ECHDC3Q96DC8 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
ECHDC3Q96DC8 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
ECHDC3Q96DC8 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
ECHDC3Q96DC8 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.44■■□□□ 1.02
ECHDC3Q96DC8 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.44■■□□□ 1.02
ECHDC3Q96DC8 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
ECHDC3Q96DC8 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
ECHDC3Q96DC8 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC21.44■■□□□ 1.02
ECHDC3Q96DC8 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.44■■□□□ 1.02
ECHDC3Q96DC8 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC21.44■■□□□ 1.02
ECHDC3Q96DC8 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
ECHDC3Q96DC8 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
ECHDC3Q96DC8 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
ECHDC3Q96DC8 AC026471.6-201ENST00000622954 1905 ntBASIC21.43■■□□□ 1.02
ECHDC3Q96DC8 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
ECHDC3Q96DC8 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.43■■□□□ 1.02
ECHDC3Q96DC8 AC022517.1-201ENST00000592429 346 ntBASIC21.43■■□□□ 1.02
ECHDC3Q96DC8 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
ECHDC3Q96DC8 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
ECHDC3Q96DC8 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
ECHDC3Q96DC8 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
ECHDC3Q96DC8 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC21.43■■□□□ 1.02
ECHDC3Q96DC8 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC21.43■■□□□ 1.02
ECHDC3Q96DC8 AC003102.1-202ENST00000563394 1796 ntBASIC21.43■■□□□ 1.02
ECHDC3Q96DC8 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
ECHDC3Q96DC8 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
ECHDC3Q96DC8 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms