Protein–RNA interactions for Protein: Q8NE63

HIPK4, Homeodomain-interacting protein kinase 4, humanhuman

Predictions only

Length 616 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK4Q8NE63 LINC01006-201ENST00000333319 2292 ntBASIC20.66■□□□□ 0.9
HIPK4Q8NE63 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HIPK4Q8NE63 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
HIPK4Q8NE63 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HIPK4Q8NE63 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.66■□□□□ 0.9
HIPK4Q8NE63 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
HIPK4Q8NE63 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.66■□□□□ 0.9
HIPK4Q8NE63 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HIPK4Q8NE63 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.66■□□□□ 0.9
HIPK4Q8NE63 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.66■□□□□ 0.9
HIPK4Q8NE63 FP325331.1-202ENST00000623531 1380 ntBASIC20.66■□□□□ 0.9
HIPK4Q8NE63 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HIPK4Q8NE63 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
HIPK4Q8NE63 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
HIPK4Q8NE63 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HIPK4Q8NE63 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HIPK4Q8NE63 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HIPK4Q8NE63 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.65■□□□□ 0.9
HIPK4Q8NE63 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.65■□□□□ 0.9
HIPK4Q8NE63 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
HIPK4Q8NE63 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HIPK4Q8NE63 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
HIPK4Q8NE63 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC20.65■□□□□ 0.9
HIPK4Q8NE63 AC021242.3-201ENST00000607598 1377 ntBASIC20.65■□□□□ 0.9
HIPK4Q8NE63 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.65■□□□□ 0.9
HIPK4Q8NE63 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HIPK4Q8NE63 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
HIPK4Q8NE63 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HIPK4Q8NE63 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.65■□□□□ 0.9
HIPK4Q8NE63 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HIPK4Q8NE63 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
HIPK4Q8NE63 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HIPK4Q8NE63 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
HIPK4Q8NE63 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HIPK4Q8NE63 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HIPK4Q8NE63 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HIPK4Q8NE63 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HIPK4Q8NE63 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HIPK4Q8NE63 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HIPK4Q8NE63 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
HIPK4Q8NE63 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
HIPK4Q8NE63 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.64■□□□□ 0.89
HIPK4Q8NE63 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
HIPK4Q8NE63 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
HIPK4Q8NE63 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HIPK4Q8NE63 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HIPK4Q8NE63 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
HIPK4Q8NE63 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
HIPK4Q8NE63 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
HIPK4Q8NE63 BX664725.1-201ENST00000438252 379 ntBASIC20.63■□□□□ 0.89
HIPK4Q8NE63 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
HIPK4Q8NE63 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HIPK4Q8NE63 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
HIPK4Q8NE63 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC20.63■□□□□ 0.89
HIPK4Q8NE63 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
HIPK4Q8NE63 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HIPK4Q8NE63 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HIPK4Q8NE63 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.62■□□□□ 0.89
HIPK4Q8NE63 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HIPK4Q8NE63 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
HIPK4Q8NE63 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.62■□□□□ 0.89
HIPK4Q8NE63 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HIPK4Q8NE63 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HIPK4Q8NE63 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HIPK4Q8NE63 AL391422.3-201ENST00000603791 2761 ntBASIC20.62■□□□□ 0.89
HIPK4Q8NE63 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HIPK4Q8NE63 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HIPK4Q8NE63 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
HIPK4Q8NE63 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HIPK4Q8NE63 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
HIPK4Q8NE63 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HIPK4Q8NE63 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
HIPK4Q8NE63 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.62■□□□□ 0.89
HIPK4Q8NE63 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HIPK4Q8NE63 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HIPK4Q8NE63 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
HIPK4Q8NE63 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC20.61■□□□□ 0.89
HIPK4Q8NE63 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
HIPK4Q8NE63 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
HIPK4Q8NE63 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
HIPK4Q8NE63 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HIPK4Q8NE63 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HIPK4Q8NE63 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HIPK4Q8NE63 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HIPK4Q8NE63 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HIPK4Q8NE63 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
HIPK4Q8NE63 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HIPK4Q8NE63 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
HIPK4Q8NE63 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HIPK4Q8NE63 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HIPK4Q8NE63 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HIPK4Q8NE63 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.61■□□□□ 0.89
HIPK4Q8NE63 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
HIPK4Q8NE63 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.61■□□□□ 0.89
HIPK4Q8NE63 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HIPK4Q8NE63 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HIPK4Q8NE63 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HIPK4Q8NE63 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HIPK4Q8NE63 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC20.6■□□□□ 0.89
HIPK4Q8NE63 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms