Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC26.25■■□□□ 1.79
USP48Q86UV5 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USP48Q86UV5 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USP48Q86UV5 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
USP48Q86UV5 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
USP48Q86UV5 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
USP48Q86UV5 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
USP48Q86UV5 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
USP48Q86UV5 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC26.24■■□□□ 1.79
USP48Q86UV5 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC26.24■■□□□ 1.79
USP48Q86UV5 TFG-210ENST00000620299 1289 ntTSL 5 BASIC26.24■■□□□ 1.79
USP48Q86UV5 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
USP48Q86UV5 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
USP48Q86UV5 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
USP48Q86UV5 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
USP48Q86UV5 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
USP48Q86UV5 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
USP48Q86UV5 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
USP48Q86UV5 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC26.23■■□□□ 1.79
USP48Q86UV5 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC26.23■■□□□ 1.79
USP48Q86UV5 SLC7A5P2-201ENST00000553010 536 ntBASIC26.23■■□□□ 1.79
USP48Q86UV5 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
USP48Q86UV5 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC26.22■■□□□ 1.79
USP48Q86UV5 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
USP48Q86UV5 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
USP48Q86UV5 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
USP48Q86UV5 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
USP48Q86UV5 METTL15-202ENST00000403099 795 ntTSL 5 BASIC26.22■■□□□ 1.79
USP48Q86UV5 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
USP48Q86UV5 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
USP48Q86UV5 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC26.22■■□□□ 1.79
USP48Q86UV5 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC26.22■■□□□ 1.79
USP48Q86UV5 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
USP48Q86UV5 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
USP48Q86UV5 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC26.22■■□□□ 1.79
USP48Q86UV5 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
USP48Q86UV5 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
USP48Q86UV5 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
USP48Q86UV5 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
USP48Q86UV5 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
USP48Q86UV5 FAM201B-201ENST00000458407 597 ntBASIC26.21■■□□□ 1.79
USP48Q86UV5 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC26.21■■□□□ 1.79
USP48Q86UV5 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC26.21■■□□□ 1.79
USP48Q86UV5 CPT2-209ENST00000636935 803 ntTSL 5 BASIC26.21■■□□□ 1.79
USP48Q86UV5 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
USP48Q86UV5 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
USP48Q86UV5 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
USP48Q86UV5 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
USP48Q86UV5 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC26.2■■□□□ 1.79
USP48Q86UV5 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
USP48Q86UV5 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC26.2■■□□□ 1.79
USP48Q86UV5 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC26.2■■□□□ 1.78
USP48Q86UV5 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC26.2■■□□□ 1.78
USP48Q86UV5 AC093827.2-201ENST00000512654 315 ntBASIC26.2■■□□□ 1.78
USP48Q86UV5 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
USP48Q86UV5 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC26.2■■□□□ 1.78
USP48Q86UV5 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC26.2■■□□□ 1.78
USP48Q86UV5 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
USP48Q86UV5 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
USP48Q86UV5 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
USP48Q86UV5 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
USP48Q86UV5 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
USP48Q86UV5 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
USP48Q86UV5 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
USP48Q86UV5 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
USP48Q86UV5 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
USP48Q86UV5 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
USP48Q86UV5 DUX4L16-201ENST00000555130 1264 ntBASIC26.19■■□□□ 1.78
USP48Q86UV5 DET1-205ENST00000558413 583 ntTSL 4 BASIC26.19■■□□□ 1.78
USP48Q86UV5 AC005181.1-201ENST00000604782 1256 ntBASIC26.19■■□□□ 1.78
USP48Q86UV5 AC231657.2-201ENST00000624556 255 ntBASIC26.19■■□□□ 1.78
USP48Q86UV5 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC26.19■■□□□ 1.78
USP48Q86UV5 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC26.19■■□□□ 1.78
USP48Q86UV5 EI24-211ENST00000534546 1544 ntTSL 2 BASIC26.19■■□□□ 1.78
USP48Q86UV5 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
USP48Q86UV5 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
USP48Q86UV5 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC26.18■■□□□ 1.78
USP48Q86UV5 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
USP48Q86UV5 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
USP48Q86UV5 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC26.18■■□□□ 1.78
USP48Q86UV5 AC007322.1-201ENST00000426983 750 ntBASIC26.18■■□□□ 1.78
USP48Q86UV5 AC069152.1-201ENST00000438030 544 ntBASIC26.18■■□□□ 1.78
USP48Q86UV5 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC26.18■■□□□ 1.78
USP48Q86UV5 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC26.18■■□□□ 1.78
USP48Q86UV5 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
USP48Q86UV5 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
USP48Q86UV5 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
USP48Q86UV5 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
USP48Q86UV5 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
USP48Q86UV5 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
USP48Q86UV5 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
USP48Q86UV5 GUSBP5-202ENST00000510805 1989 ntBASIC26.17■■□□□ 1.78
USP48Q86UV5 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC26.17■■□□□ 1.78
USP48Q86UV5 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC26.17■■□□□ 1.78
USP48Q86UV5 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC26.17■■□□□ 1.78
USP48Q86UV5 OAS3-207ENST00000551007 998 ntTSL 2 BASIC26.17■■□□□ 1.78
USP48Q86UV5 PFKL-212ENST00000628044 129 ntTSL 3 BASIC26.17■■□□□ 1.78
USP48Q86UV5 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC26.17■■□□□ 1.78
USP48Q86UV5 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC26.17■■□□□ 1.78
USP48Q86UV5 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms