Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CCDC40Q4G0X9 AC135279.3-201ENST00000610945 1311 ntBASIC23.51■■□□□ 1.35
CCDC40Q4G0X9 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
CCDC40Q4G0X9 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CCDC40Q4G0X9 AC244015.2-201ENST00000616358 1861 ntBASIC23.51■■□□□ 1.35
CCDC40Q4G0X9 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
CCDC40Q4G0X9 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC23.51■■□□□ 1.35
CCDC40Q4G0X9 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC23.51■■□□□ 1.35
CCDC40Q4G0X9 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
CCDC40Q4G0X9 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC23.5■■□□□ 1.35
CCDC40Q4G0X9 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC23.5■■□□□ 1.35
CCDC40Q4G0X9 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CCDC40Q4G0X9 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CCDC40Q4G0X9 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CCDC40Q4G0X9 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
CCDC40Q4G0X9 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC23.5■■□□□ 1.35
CCDC40Q4G0X9 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC23.5■■□□□ 1.35
CCDC40Q4G0X9 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CCDC40Q4G0X9 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC23.49■■□□□ 1.35
CCDC40Q4G0X9 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC23.49■■□□□ 1.35
CCDC40Q4G0X9 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC23.49■■□□□ 1.35
CCDC40Q4G0X9 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CCDC40Q4G0X9 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC23.49■■□□□ 1.35
CCDC40Q4G0X9 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC23.49■■□□□ 1.35
CCDC40Q4G0X9 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC23.49■■□□□ 1.35
CCDC40Q4G0X9 PEMT-206ENST00000435340 960 ntTSL 5 BASIC23.49■■□□□ 1.35
CCDC40Q4G0X9 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC23.49■■□□□ 1.35
CCDC40Q4G0X9 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC23.49■■□□□ 1.35
CCDC40Q4G0X9 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CCDC40Q4G0X9 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CCDC40Q4G0X9 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CCDC40Q4G0X9 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CCDC40Q4G0X9 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CCDC40Q4G0X9 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CCDC40Q4G0X9 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CCDC40Q4G0X9 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CCDC40Q4G0X9 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC23.48■■□□□ 1.35
CCDC40Q4G0X9 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC23.48■■□□□ 1.35
CCDC40Q4G0X9 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC23.48■■□□□ 1.35
CCDC40Q4G0X9 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC23.48■■□□□ 1.35
CCDC40Q4G0X9 AC096631.2-201ENST00000436136 790 ntBASIC23.48■■□□□ 1.35
CCDC40Q4G0X9 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC23.48■■□□□ 1.35
CCDC40Q4G0X9 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC23.48■■□□□ 1.35
CCDC40Q4G0X9 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CCDC40Q4G0X9 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
CCDC40Q4G0X9 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
CCDC40Q4G0X9 EFS-203ENST00000429593 2610 ntTSL 2 BASIC23.47■■□□□ 1.35
CCDC40Q4G0X9 AL137060.1-201ENST00000618151 2648 ntBASIC23.47■■□□□ 1.35
CCDC40Q4G0X9 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CCDC40Q4G0X9 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CCDC40Q4G0X9 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CCDC40Q4G0X9 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC23.47■■□□□ 1.35
CCDC40Q4G0X9 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC23.47■■□□□ 1.35
CCDC40Q4G0X9 AC233992.3-201ENST00000607491 485 ntBASIC23.47■■□□□ 1.35
CCDC40Q4G0X9 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
CCDC40Q4G0X9 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC23.47■■□□□ 1.35
CCDC40Q4G0X9 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CCDC40Q4G0X9 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CCDC40Q4G0X9 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CCDC40Q4G0X9 AP004607.7-201ENST00000527152 1677 ntBASIC23.47■■□□□ 1.35
CCDC40Q4G0X9 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC23.47■■□□□ 1.35
CCDC40Q4G0X9 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC23.47■■□□□ 1.35
CCDC40Q4G0X9 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC23.47■■□□□ 1.35
CCDC40Q4G0X9 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
CCDC40Q4G0X9 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
CCDC40Q4G0X9 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
CCDC40Q4G0X9 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
CCDC40Q4G0X9 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC23.46■■□□□ 1.35
CCDC40Q4G0X9 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
CCDC40Q4G0X9 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC23.46■■□□□ 1.35
CCDC40Q4G0X9 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC23.46■■□□□ 1.35
CCDC40Q4G0X9 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
CCDC40Q4G0X9 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC23.46■■□□□ 1.35
CCDC40Q4G0X9 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC23.46■■□□□ 1.35
CCDC40Q4G0X9 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
CCDC40Q4G0X9 AL034346.1-201ENST00000568244 1277 ntBASIC23.46■■□□□ 1.35
CCDC40Q4G0X9 AC126544.1-201ENST00000580842 1059 ntBASIC23.46■■□□□ 1.35
CCDC40Q4G0X9 AC026310.3-201ENST00000625186 2373 ntBASIC23.46■■□□□ 1.35
CCDC40Q4G0X9 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC23.46■■□□□ 1.35
CCDC40Q4G0X9 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC23.46■■□□□ 1.35
CCDC40Q4G0X9 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC23.45■■□□□ 1.35
CCDC40Q4G0X9 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
CCDC40Q4G0X9 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC23.45■■□□□ 1.35
CCDC40Q4G0X9 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
CCDC40Q4G0X9 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
CCDC40Q4G0X9 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC23.45■■□□□ 1.34
CCDC40Q4G0X9 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC23.45■■□□□ 1.34
CCDC40Q4G0X9 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
CCDC40Q4G0X9 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
CCDC40Q4G0X9 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
CCDC40Q4G0X9 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC23.45■■□□□ 1.34
CCDC40Q4G0X9 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC23.45■■□□□ 1.34
CCDC40Q4G0X9 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC23.45■■□□□ 1.34
CCDC40Q4G0X9 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC23.45■■□□□ 1.34
CCDC40Q4G0X9 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.34
CCDC40Q4G0X9 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC23.45■■□□□ 1.34
CCDC40Q4G0X9 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC23.45■■□□□ 1.34
CCDC40Q4G0X9 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
CCDC40Q4G0X9 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
CCDC40Q4G0X9 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms