Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CKS1BP61024 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
CKS1BP61024 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CKS1BP61024 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CKS1BP61024 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
CKS1BP61024 U85056.1-201ENST00000616429 682 ntBASIC14.86□□□□□ -0.03
CKS1BP61024 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
CKS1BP61024 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CKS1BP61024 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CKS1BP61024 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC14.86□□□□□ -0.03
CKS1BP61024 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
CKS1BP61024 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
CKS1BP61024 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CKS1BP61024 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CKS1BP61024 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC14.85□□□□□ -0.03
CKS1BP61024 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
CKS1BP61024 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CKS1BP61024 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC14.85□□□□□ -0.03
CKS1BP61024 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
CKS1BP61024 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CKS1BP61024 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
CKS1BP61024 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC14.85□□□□□ -0.03
CKS1BP61024 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
CKS1BP61024 THA1P-201ENST00000590384 1145 ntBASIC14.85□□□□□ -0.03
CKS1BP61024 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC14.85□□□□□ -0.03
CKS1BP61024 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CKS1BP61024 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CKS1BP61024 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CKS1BP61024 WAC-202ENST00000347934 2839 ntTSL 5 BASIC14.85□□□□□ -0.03
CKS1BP61024 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
CKS1BP61024 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CKS1BP61024 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
CKS1BP61024 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC14.84□□□□□ -0.03
CKS1BP61024 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CKS1BP61024 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
CKS1BP61024 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CKS1BP61024 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CKS1BP61024 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC14.84□□□□□ -0.03
CKS1BP61024 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC14.84□□□□□ -0.03
CKS1BP61024 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC14.84□□□□□ -0.03
CKS1BP61024 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CKS1BP61024 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC14.84□□□□□ -0.03
CKS1BP61024 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CKS1BP61024 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CKS1BP61024 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
CKS1BP61024 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CKS1BP61024 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC14.84□□□□□ -0.03
CKS1BP61024 AC120024.1-201ENST00000562672 995 ntBASIC14.84□□□□□ -0.03
CKS1BP61024 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC14.84□□□□□ -0.03
CKS1BP61024 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CKS1BP61024 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
CKS1BP61024 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CKS1BP61024 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC14.84□□□□□ -0.03
CKS1BP61024 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CKS1BP61024 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CKS1BP61024 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
CKS1BP61024 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CKS1BP61024 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CKS1BP61024 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC14.84□□□□□ -0.03
CKS1BP61024 AL353803.4-201ENST00000565882 1934 ntBASIC14.84□□□□□ -0.03
CKS1BP61024 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CKS1BP61024 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
CKS1BP61024 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC14.84□□□□□ -0.03
CKS1BP61024 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
CKS1BP61024 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CKS1BP61024 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CKS1BP61024 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CKS1BP61024 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CKS1BP61024 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CKS1BP61024 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
CKS1BP61024 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
CKS1BP61024 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
CKS1BP61024 KRT18P60-201ENST00000312876 1297 ntBASIC14.83□□□□□ -0.04
CKS1BP61024 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC14.83□□□□□ -0.04
CKS1BP61024 LSM7-203ENST00000585409 512 ntTSL 2 BASIC14.83□□□□□ -0.04
CKS1BP61024 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CKS1BP61024 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC14.83□□□□□ -0.04
CKS1BP61024 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
CKS1BP61024 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CKS1BP61024 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC14.83□□□□□ -0.04
CKS1BP61024 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
CKS1BP61024 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CKS1BP61024 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
CKS1BP61024 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC14.83□□□□□ -0.04
CKS1BP61024 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CKS1BP61024 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CKS1BP61024 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
CKS1BP61024 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC14.82□□□□□ -0.04
CKS1BP61024 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC14.82□□□□□ -0.04
CKS1BP61024 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CKS1BP61024 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
CKS1BP61024 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CKS1BP61024 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CKS1BP61024 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CKS1BP61024 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
CKS1BP61024 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CKS1BP61024 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC14.82□□□□□ -0.04
CKS1BP61024 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CKS1BP61024 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC14.82□□□□□ -0.04
CKS1BP61024 DUX4L18-201ENST00000553347 1267 ntBASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms