Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PKNOX1P55347 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PKNOX1P55347 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PKNOX1P55347 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
PKNOX1P55347 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PKNOX1P55347 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PKNOX1P55347 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
PKNOX1P55347 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
PKNOX1P55347 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.93■□□□□ 0.94
PKNOX1P55347 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
PKNOX1P55347 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PKNOX1P55347 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.93■□□□□ 0.94
PKNOX1P55347 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PKNOX1P55347 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PKNOX1P55347 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.93■□□□□ 0.94
PKNOX1P55347 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.93■□□□□ 0.94
PKNOX1P55347 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PKNOX1P55347 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PKNOX1P55347 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.93■□□□□ 0.94
PKNOX1P55347 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
PKNOX1P55347 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PKNOX1P55347 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
PKNOX1P55347 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
PKNOX1P55347 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PKNOX1P55347 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.92■□□□□ 0.94
PKNOX1P55347 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
PKNOX1P55347 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.92■□□□□ 0.94
PKNOX1P55347 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PKNOX1P55347 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
PKNOX1P55347 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PKNOX1P55347 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PKNOX1P55347 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
PKNOX1P55347 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.92■□□□□ 0.94
PKNOX1P55347 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
PKNOX1P55347 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.92■□□□□ 0.94
PKNOX1P55347 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
PKNOX1P55347 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.92■□□□□ 0.94
PKNOX1P55347 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PKNOX1P55347 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.92■□□□□ 0.94
PKNOX1P55347 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
PKNOX1P55347 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PKNOX1P55347 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.92■□□□□ 0.94
PKNOX1P55347 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PKNOX1P55347 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PKNOX1P55347 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PKNOX1P55347 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
PKNOX1P55347 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PKNOX1P55347 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
PKNOX1P55347 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
PKNOX1P55347 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
PKNOX1P55347 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.91■□□□□ 0.94
PKNOX1P55347 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
PKNOX1P55347 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
PKNOX1P55347 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
PKNOX1P55347 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
PKNOX1P55347 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PKNOX1P55347 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
PKNOX1P55347 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.9■□□□□ 0.94
PKNOX1P55347 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.9■□□□□ 0.94
PKNOX1P55347 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PKNOX1P55347 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
PKNOX1P55347 AC010141.3-201ENST00000456659 717 ntBASIC20.9■□□□□ 0.94
PKNOX1P55347 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.9■□□□□ 0.94
PKNOX1P55347 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
PKNOX1P55347 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
PKNOX1P55347 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.9■□□□□ 0.94
PKNOX1P55347 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PKNOX1P55347 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.94
PKNOX1P55347 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PKNOX1P55347 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
PKNOX1P55347 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PKNOX1P55347 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.89■□□□□ 0.93
PKNOX1P55347 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.89■□□□□ 0.93
PKNOX1P55347 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PKNOX1P55347 AL138724.1-201ENST00000606771 1088 ntBASIC20.89■□□□□ 0.93
PKNOX1P55347 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PKNOX1P55347 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PKNOX1P55347 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
PKNOX1P55347 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.88■□□□□ 0.93
PKNOX1P55347 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PKNOX1P55347 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.88■□□□□ 0.93
PKNOX1P55347 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
PKNOX1P55347 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PKNOX1P55347 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PKNOX1P55347 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.88■□□□□ 0.93
PKNOX1P55347 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
PKNOX1P55347 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.88■□□□□ 0.93
PKNOX1P55347 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PKNOX1P55347 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PKNOX1P55347 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PKNOX1P55347 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PKNOX1P55347 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PKNOX1P55347 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.87■□□□□ 0.93
PKNOX1P55347 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PKNOX1P55347 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.87■□□□□ 0.93
PKNOX1P55347 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
PKNOX1P55347 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.87■□□□□ 0.93
PKNOX1P55347 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.87■□□□□ 0.93
PKNOX1P55347 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.87■□□□□ 0.93
PKNOX1P55347 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms