Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
FOXA1P55317 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.74■□□□□ 0.91
FOXA1P55317 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
FOXA1P55317 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
FOXA1P55317 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
FOXA1P55317 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
FOXA1P55317 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.74■□□□□ 0.91
FOXA1P55317 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
FOXA1P55317 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.74■□□□□ 0.91
FOXA1P55317 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.74■□□□□ 0.91
FOXA1P55317 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.74■□□□□ 0.91
FOXA1P55317 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
FOXA1P55317 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.74■□□□□ 0.91
FOXA1P55317 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.74■□□□□ 0.91
FOXA1P55317 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
FOXA1P55317 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
FOXA1P55317 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
FOXA1P55317 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.73■□□□□ 0.91
FOXA1P55317 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
FOXA1P55317 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
FOXA1P55317 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.73■□□□□ 0.91
FOXA1P55317 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
FOXA1P55317 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.73■□□□□ 0.91
FOXA1P55317 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
FOXA1P55317 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
FOXA1P55317 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
FOXA1P55317 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
FOXA1P55317 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
FOXA1P55317 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
FOXA1P55317 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.73■□□□□ 0.91
FOXA1P55317 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
FOXA1P55317 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
FOXA1P55317 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
FOXA1P55317 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
FOXA1P55317 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
FOXA1P55317 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.72■□□□□ 0.91
FOXA1P55317 SLC47A1P1-202ENST00000449666 945 ntBASIC20.72■□□□□ 0.91
FOXA1P55317 AC131281.2-201ENST00000520478 145 ntBASIC20.72■□□□□ 0.91
FOXA1P55317 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.72■□□□□ 0.91
FOXA1P55317 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.72■□□□□ 0.91
FOXA1P55317 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.72■□□□□ 0.91
FOXA1P55317 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
FOXA1P55317 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
FOXA1P55317 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
FOXA1P55317 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
FOXA1P55317 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
FOXA1P55317 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
FOXA1P55317 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
FOXA1P55317 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.71■□□□□ 0.91
FOXA1P55317 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
FOXA1P55317 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
FOXA1P55317 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
FOXA1P55317 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
FOXA1P55317 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
FOXA1P55317 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
FOXA1P55317 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
FOXA1P55317 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
FOXA1P55317 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
FOXA1P55317 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
FOXA1P55317 AL138724.1-201ENST00000606771 1088 ntBASIC20.71■□□□□ 0.91
FOXA1P55317 AC136469.2-201ENST00000623944 1028 ntBASIC20.71■□□□□ 0.91
FOXA1P55317 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.71■□□□□ 0.91
FOXA1P55317 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
FOXA1P55317 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.71■□□□□ 0.91
FOXA1P55317 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
FOXA1P55317 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
FOXA1P55317 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
FOXA1P55317 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
FOXA1P55317 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
FOXA1P55317 AC104564.3-201ENST00000582367 638 ntBASIC20.7■□□□□ 0.9
FOXA1P55317 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.7■□□□□ 0.9
FOXA1P55317 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
FOXA1P55317 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
FOXA1P55317 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
FOXA1P55317 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
FOXA1P55317 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
FOXA1P55317 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
FOXA1P55317 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
FOXA1P55317 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
FOXA1P55317 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
FOXA1P55317 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
FOXA1P55317 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
FOXA1P55317 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.69■□□□□ 0.9
FOXA1P55317 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
FOXA1P55317 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
FOXA1P55317 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
FOXA1P55317 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.68■□□□□ 0.9
FOXA1P55317 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
FOXA1P55317 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
FOXA1P55317 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
FOXA1P55317 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
FOXA1P55317 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.68■□□□□ 0.9
FOXA1P55317 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
FOXA1P55317 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
FOXA1P55317 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
FOXA1P55317 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.68■□□□□ 0.9
FOXA1P55317 AC011298.3-201ENST00000615796 283 ntBASIC20.68■□□□□ 0.9
FOXA1P55317 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
FOXA1P55317 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
FOXA1P55317 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms