Protein–RNA interactions for Protein: P49761

CLK3, Dual specificity protein kinase CLK3, humanhuman

Known RBP Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3P49761 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.2■□□□□ 0.82
CLK3P49761 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLK3P49761 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.2■□□□□ 0.82
CLK3P49761 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLK3P49761 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLK3P49761 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.2■□□□□ 0.82
CLK3P49761 AC106739.1-201ENST00000617035 715 ntBASIC20.2■□□□□ 0.82
CLK3P49761 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.2■□□□□ 0.82
CLK3P49761 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLK3P49761 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.19■□□□□ 0.82
CLK3P49761 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CLK3P49761 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CLK3P49761 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.19■□□□□ 0.82
CLK3P49761 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.19■□□□□ 0.82
CLK3P49761 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CLK3P49761 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CLK3P49761 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLK3P49761 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CLK3P49761 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLK3P49761 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.18■□□□□ 0.82
CLK3P49761 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLK3P49761 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLK3P49761 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.18■□□□□ 0.82
CLK3P49761 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
CLK3P49761 OR2I1P-207ENST00000453522 948 ntBASIC20.18■□□□□ 0.82
CLK3P49761 MIR4767-201ENST00000582827 78 ntBASIC20.18■□□□□ 0.82
CLK3P49761 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLK3P49761 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLK3P49761 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.18■□□□□ 0.82
CLK3P49761 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLK3P49761 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLK3P49761 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
CLK3P49761 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.18■□□□□ 0.82
CLK3P49761 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
CLK3P49761 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLK3P49761 AC073130.3-201ENST00000624389 2278 ntBASIC20.18■□□□□ 0.82
CLK3P49761 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLK3P49761 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.17■□□□□ 0.82
CLK3P49761 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLK3P49761 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLK3P49761 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CLK3P49761 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
CLK3P49761 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLK3P49761 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.17■□□□□ 0.82
CLK3P49761 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.17■□□□□ 0.82
CLK3P49761 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.17■□□□□ 0.82
CLK3P49761 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
CLK3P49761 AC110285.6-201ENST00000617652 491 ntBASIC20.17■□□□□ 0.82
CLK3P49761 AC068587.7-201ENST00000641602 218 ntBASIC20.17■□□□□ 0.82
CLK3P49761 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLK3P49761 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLK3P49761 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
CLK3P49761 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.17■□□□□ 0.82
CLK3P49761 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
CLK3P49761 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CLK3P49761 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.16■□□□□ 0.82
CLK3P49761 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLK3P49761 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLK3P49761 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.16■□□□□ 0.82
CLK3P49761 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.16■□□□□ 0.82
CLK3P49761 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
CLK3P49761 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLK3P49761 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLK3P49761 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
CLK3P49761 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
CLK3P49761 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLK3P49761 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
CLK3P49761 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLK3P49761 EDA-201ENST00000338901 1233 ntBASIC20.15■□□□□ 0.82
CLK3P49761 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CLK3P49761 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CLK3P49761 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CLK3P49761 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.15■□□□□ 0.82
CLK3P49761 AC133561.4-201ENST00000566112 224 ntBASIC20.15■□□□□ 0.82
CLK3P49761 AC087239.1-201ENST00000622671 572 ntBASIC20.15■□□□□ 0.82
CLK3P49761 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
CLK3P49761 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.15■□□□□ 0.82
CLK3P49761 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.15■□□□□ 0.82
CLK3P49761 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLK3P49761 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLK3P49761 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLK3P49761 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLK3P49761 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLK3P49761 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
CLK3P49761 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.14■□□□□ 0.82
CLK3P49761 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.14■□□□□ 0.81
CLK3P49761 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLK3P49761 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLK3P49761 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLK3P49761 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
CLK3P49761 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.14■□□□□ 0.81
CLK3P49761 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
CLK3P49761 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.14■□□□□ 0.81
CLK3P49761 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.14■□□□□ 0.81
CLK3P49761 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
CLK3P49761 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLK3P49761 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
CLK3P49761 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLK3P49761 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLK3P49761 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms