Protein–RNA interactions for Protein: P46779

RPL28, 60S ribosomal protein L28, humanhuman

Known RBP Predictions only

Length 137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28P46779 KRT125P-201ENST00000546827 989 ntBASIC14.05□□□□□ -0.16
RPL28P46779 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC14.05□□□□□ -0.16
RPL28P46779 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC14.05□□□□□ -0.16
RPL28P46779 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC14.05□□□□□ -0.16
RPL28P46779 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC14.05□□□□□ -0.16
RPL28P46779 FEM1AP1-201ENST00000431297 1995 ntBASIC14.05□□□□□ -0.16
RPL28P46779 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RPL28P46779 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RPL28P46779 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RPL28P46779 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RPL28P46779 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RPL28P46779 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPL28P46779 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPL28P46779 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPL28P46779 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RPL28P46779 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC14.04□□□□□ -0.16
RPL28P46779 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPL28P46779 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
RPL28P46779 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RPL28P46779 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC14.04□□□□□ -0.16
RPL28P46779 AC137630.3-201ENST00000607245 391 ntBASIC14.04□□□□□ -0.16
RPL28P46779 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
RPL28P46779 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPL28P46779 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPL28P46779 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPL28P46779 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPL28P46779 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPL28P46779 AF131216.4-201ENST00000638924 1588 ntBASIC14.04□□□□□ -0.16
RPL28P46779 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPL28P46779 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC14.04□□□□□ -0.16
RPL28P46779 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPL28P46779 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPL28P46779 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RPL28P46779 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPL28P46779 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPL28P46779 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC14.03□□□□□ -0.16
RPL28P46779 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC14.03□□□□□ -0.16
RPL28P46779 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPL28P46779 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RPL28P46779 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC14.03□□□□□ -0.16
RPL28P46779 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC14.03□□□□□ -0.16
RPL28P46779 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC14.03□□□□□ -0.16
RPL28P46779 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPL28P46779 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RPL28P46779 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RPL28P46779 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPL28P46779 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RPL28P46779 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
RPL28P46779 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
RPL28P46779 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC14.03□□□□□ -0.16
RPL28P46779 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPL28P46779 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPL28P46779 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC14.03□□□□□ -0.16
RPL28P46779 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPL28P46779 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
RPL28P46779 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC14.03□□□□□ -0.16
RPL28P46779 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
RPL28P46779 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
RPL28P46779 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
RPL28P46779 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC14.02□□□□□ -0.16
RPL28P46779 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
RPL28P46779 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC14.02□□□□□ -0.16
RPL28P46779 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RPL28P46779 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RPL28P46779 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
RPL28P46779 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RPL28P46779 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RPL28P46779 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC14.02□□□□□ -0.17
RPL28P46779 AC004448.1-201ENST00000458332 883 ntBASIC14.02□□□□□ -0.17
RPL28P46779 RARRES2P1-201ENST00000474487 481 ntBASIC14.02□□□□□ -0.17
RPL28P46779 RNF146-205ENST00000477776 762 ntTSL 3 BASIC14.02□□□□□ -0.17
RPL28P46779 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
RPL28P46779 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
RPL28P46779 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC14.02□□□□□ -0.17
RPL28P46779 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC14.02□□□□□ -0.17
RPL28P46779 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
RPL28P46779 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RPL28P46779 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC14.02□□□□□ -0.17
RPL28P46779 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RPL28P46779 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
RPL28P46779 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RPL28P46779 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RPL28P46779 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
RPL28P46779 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RPL28P46779 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RPL28P46779 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RPL28P46779 TK2-202ENST00000417693 1046 ntTSL 2 BASIC14.01□□□□□ -0.17
RPL28P46779 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC14.01□□□□□ -0.17
RPL28P46779 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RPL28P46779 Z92544.1-202ENST00000571933 1220 ntBASIC14.01□□□□□ -0.17
RPL28P46779 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC14.01□□□□□ -0.17
RPL28P46779 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC14.01□□□□□ -0.17
RPL28P46779 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
RPL28P46779 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RPL28P46779 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
RPL28P46779 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RPL28P46779 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RPL28P46779 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC14.01□□□□□ -0.17
RPL28P46779 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC14.01□□□□□ -0.17
RPL28P46779 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms