Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.29■■□□□ 1
MSH3P20585 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
MSH3P20585 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC21.29■■□□□ 1
MSH3P20585 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.29■■□□□ 1
MSH3P20585 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.29■■□□□ 1
MSH3P20585 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
MSH3P20585 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MSH3P20585 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC21.28■■□□□ 1
MSH3P20585 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
MSH3P20585 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
MSH3P20585 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MSH3P20585 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MSH3P20585 AC027612.3-201ENST00000413684 1047 ntBASIC21.28■■□□□ 1
MSH3P20585 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC21.28■■□□□ 1
MSH3P20585 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MSH3P20585 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MSH3P20585 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
MSH3P20585 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MSH3P20585 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.28■■□□□ 1
MSH3P20585 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.27■■□□□ 1
MSH3P20585 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
MSH3P20585 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
MSH3P20585 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
MSH3P20585 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC21.27■■□□□ 1
MSH3P20585 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC21.27■■□□□ 1
MSH3P20585 SP2-202ENST00000613139 908 ntTSL 5 BASIC21.27■■□□□ 1
MSH3P20585 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
MSH3P20585 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.27■□□□□ 0.99
MSH3P20585 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
MSH3P20585 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH3P20585 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC21.26■□□□□ 0.99
MSH3P20585 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.26■□□□□ 0.99
MSH3P20585 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.26■□□□□ 0.99
MSH3P20585 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
MSH3P20585 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.26■□□□□ 0.99
MSH3P20585 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH3P20585 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH3P20585 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC21.26■□□□□ 0.99
MSH3P20585 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC21.26■□□□□ 0.99
MSH3P20585 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH3P20585 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH3P20585 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.26■□□□□ 0.99
MSH3P20585 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC21.26■□□□□ 0.99
MSH3P20585 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC21.26■□□□□ 0.99
MSH3P20585 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
MSH3P20585 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.26■□□□□ 0.99
MSH3P20585 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
MSH3P20585 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MSH3P20585 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
MSH3P20585 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.25■□□□□ 0.99
MSH3P20585 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MSH3P20585 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MSH3P20585 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MSH3P20585 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
MSH3P20585 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
MSH3P20585 AC009237.3-201ENST00000393279 1427 ntBASIC21.25■□□□□ 0.99
MSH3P20585 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
MSH3P20585 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
MSH3P20585 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
MSH3P20585 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC21.25■□□□□ 0.99
MSH3P20585 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC21.25■□□□□ 0.99
MSH3P20585 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
MSH3P20585 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
MSH3P20585 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
MSH3P20585 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.25■□□□□ 0.99
MSH3P20585 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.24■□□□□ 0.99
MSH3P20585 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH3P20585 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH3P20585 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
MSH3P20585 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH3P20585 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH3P20585 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH3P20585 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH3P20585 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
MSH3P20585 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH3P20585 C11orf96-202ENST00000528572 1834 ntBASIC21.24■□□□□ 0.99
MSH3P20585 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC21.24■□□□□ 0.99
MSH3P20585 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.24■□□□□ 0.99
MSH3P20585 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
MSH3P20585 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH3P20585 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MSH3P20585 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC21.23■□□□□ 0.99
MSH3P20585 YBX1P1-201ENST00000445822 960 ntBASIC21.23■□□□□ 0.99
MSH3P20585 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.23■□□□□ 0.99
MSH3P20585 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.23■□□□□ 0.99
MSH3P20585 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
MSH3P20585 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC21.23■□□□□ 0.99
MSH3P20585 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
MSH3P20585 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
MSH3P20585 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MSH3P20585 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MSH3P20585 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
MSH3P20585 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MSH3P20585 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MSH3P20585 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSH3P20585 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSH3P20585 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSH3P20585 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSH3P20585 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC21.22■□□□□ 0.99
MSH3P20585 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms