Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 RHOF-204ENST00000537265 699 ntTSL 2 BASIC18.79■□□□□ 0.6
LMX1BO60663 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC18.79■□□□□ 0.6
LMX1BO60663 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LMX1BO60663 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC18.79■□□□□ 0.6
LMX1BO60663 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
LMX1BO60663 AC133637.1-201ENST00000624115 1537 ntBASIC18.79■□□□□ 0.6
LMX1BO60663 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC18.79■□□□□ 0.6
LMX1BO60663 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LMX1BO60663 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LMX1BO60663 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LMX1BO60663 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
LMX1BO60663 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC18.78■□□□□ 0.6
LMX1BO60663 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LMX1BO60663 JTB-203ENST00000368589 1216 ntTSL 2 BASIC18.78■□□□□ 0.6
LMX1BO60663 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
LMX1BO60663 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC18.78■□□□□ 0.6
LMX1BO60663 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC18.78■□□□□ 0.6
LMX1BO60663 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC18.78■□□□□ 0.6
LMX1BO60663 pRNA.6-201ENST00000610482 90 ntBASIC18.78■□□□□ 0.6
LMX1BO60663 pRNA.5-201ENST00000612139 90 ntBASIC18.78■□□□□ 0.6
LMX1BO60663 pRNA.11-201ENST00000618423 90 ntBASIC18.78■□□□□ 0.6
LMX1BO60663 pRNA.13-201ENST00000619112 90 ntBASIC18.78■□□□□ 0.6
LMX1BO60663 AC241377.3-202ENST00000626088 1088 ntBASIC18.78■□□□□ 0.6
LMX1BO60663 AC241585.3-202ENST00000628937 1088 ntBASIC18.78■□□□□ 0.6
LMX1BO60663 AC245100.8-202ENST00000629247 1058 ntBASIC18.78■□□□□ 0.6
LMX1BO60663 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC18.78■□□□□ 0.6
LMX1BO60663 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
LMX1BO60663 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC18.78■□□□□ 0.6
LMX1BO60663 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
LMX1BO60663 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
LMX1BO60663 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LMX1BO60663 AC026471.6-201ENST00000622954 1905 ntBASIC18.78■□□□□ 0.6
LMX1BO60663 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC18.78■□□□□ 0.6
LMX1BO60663 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC18.78■□□□□ 0.6
LMX1BO60663 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LMX1BO60663 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
LMX1BO60663 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LMX1BO60663 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LMX1BO60663 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC18.77■□□□□ 0.6
LMX1BO60663 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC18.77■□□□□ 0.6
LMX1BO60663 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC18.77■□□□□ 0.6
LMX1BO60663 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LMX1BO60663 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LMX1BO60663 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
LMX1BO60663 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC18.77■□□□□ 0.59
LMX1BO60663 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.59
LMX1BO60663 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC18.76■□□□□ 0.59
LMX1BO60663 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
LMX1BO60663 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LMX1BO60663 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LMX1BO60663 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LMX1BO60663 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC18.76■□□□□ 0.59
LMX1BO60663 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC18.76■□□□□ 0.59
LMX1BO60663 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
LMX1BO60663 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC18.76■□□□□ 0.59
LMX1BO60663 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC18.76■□□□□ 0.59
LMX1BO60663 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
LMX1BO60663 AL031602.1-201ENST00000633169 911 ntBASIC18.76■□□□□ 0.59
LMX1BO60663 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LMX1BO60663 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LMX1BO60663 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC18.76■□□□□ 0.59
LMX1BO60663 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
LMX1BO60663 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LMX1BO60663 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC18.76■□□□□ 0.59
LMX1BO60663 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC18.76■□□□□ 0.59
LMX1BO60663 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LMX1BO60663 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LMX1BO60663 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC18.75■□□□□ 0.59
LMX1BO60663 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LMX1BO60663 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LMX1BO60663 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LMX1BO60663 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LMX1BO60663 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LMX1BO60663 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC18.75■□□□□ 0.59
LMX1BO60663 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC18.75■□□□□ 0.59
LMX1BO60663 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
LMX1BO60663 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LMX1BO60663 AC136469.2-201ENST00000623944 1028 ntBASIC18.75■□□□□ 0.59
LMX1BO60663 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LMX1BO60663 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
LMX1BO60663 AC244015.2-201ENST00000616358 1861 ntBASIC18.75■□□□□ 0.59
LMX1BO60663 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LMX1BO60663 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LMX1BO60663 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LMX1BO60663 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC18.74■□□□□ 0.59
LMX1BO60663 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LMX1BO60663 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC18.74■□□□□ 0.59
LMX1BO60663 PALM-208ENST00000592155 2272 ntTSL 4 BASIC18.74■□□□□ 0.59
LMX1BO60663 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LMX1BO60663 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LMX1BO60663 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC18.74■□□□□ 0.59
LMX1BO60663 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LMX1BO60663 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LMX1BO60663 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
LMX1BO60663 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LMX1BO60663 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
LMX1BO60663 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC18.74■□□□□ 0.59
LMX1BO60663 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LMX1BO60663 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LMX1BO60663 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms