Protein–RNA interactions for Protein: O60609

GFRA3, GDNF family receptor alpha-3, humanhuman

Predictions only

Length 400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA3O60609 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC21.14■□□□□ 0.98
GFRA3O60609 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
GFRA3O60609 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
GFRA3O60609 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC21.14■□□□□ 0.97
GFRA3O60609 TSPY15P-201ENST00000457163 923 ntBASIC21.14■□□□□ 0.97
GFRA3O60609 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
GFRA3O60609 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC21.14■□□□□ 0.97
GFRA3O60609 MIR4785-201ENST00000585005 73 ntBASIC21.14■□□□□ 0.97
GFRA3O60609 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
GFRA3O60609 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
GFRA3O60609 HLA-L-211ENST00000482052 1765 ntBASIC21.13■□□□□ 0.97
GFRA3O60609 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
GFRA3O60609 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
GFRA3O60609 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
GFRA3O60609 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
GFRA3O60609 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
GFRA3O60609 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC21.13■□□□□ 0.97
GFRA3O60609 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC21.13■□□□□ 0.97
GFRA3O60609 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
GFRA3O60609 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
GFRA3O60609 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
GFRA3O60609 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
GFRA3O60609 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC21.12■□□□□ 0.97
GFRA3O60609 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
GFRA3O60609 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
GFRA3O60609 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
GFRA3O60609 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
GFRA3O60609 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC21.11■□□□□ 0.97
GFRA3O60609 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
GFRA3O60609 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
GFRA3O60609 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
GFRA3O60609 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
GFRA3O60609 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
GFRA3O60609 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC21.11■□□□□ 0.97
GFRA3O60609 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
GFRA3O60609 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC21.11■□□□□ 0.97
GFRA3O60609 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC21.11■□□□□ 0.97
GFRA3O60609 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC21.11■□□□□ 0.97
GFRA3O60609 AC233263.1-201ENST00000578059 224 ntBASIC21.11■□□□□ 0.97
GFRA3O60609 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC21.11■□□□□ 0.97
GFRA3O60609 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
GFRA3O60609 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
GFRA3O60609 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
GFRA3O60609 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
GFRA3O60609 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
GFRA3O60609 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.1■□□□□ 0.97
GFRA3O60609 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.1■□□□□ 0.97
GFRA3O60609 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
GFRA3O60609 NAA20-201ENST00000310450 920 ntTSL 2 BASIC21.1■□□□□ 0.97
GFRA3O60609 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC21.1■□□□□ 0.97
GFRA3O60609 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
GFRA3O60609 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC21.1■□□□□ 0.97
GFRA3O60609 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
GFRA3O60609 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC21.1■□□□□ 0.97
GFRA3O60609 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC21.1■□□□□ 0.97
GFRA3O60609 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
GFRA3O60609 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC21.1■□□□□ 0.97
GFRA3O60609 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
GFRA3O60609 HLA-B-256ENST00000639848 1089 ntBASIC21.1■□□□□ 0.97
GFRA3O60609 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC21.1■□□□□ 0.97
GFRA3O60609 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
GFRA3O60609 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
GFRA3O60609 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
GFRA3O60609 AC055733.4-201ENST00000638462 1354 ntBASIC21.1■□□□□ 0.97
GFRA3O60609 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC21.09■□□□□ 0.97
GFRA3O60609 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
GFRA3O60609 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC21.09■□□□□ 0.97
GFRA3O60609 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
GFRA3O60609 TPM4P1-201ENST00000436100 807 ntBASIC21.09■□□□□ 0.97
GFRA3O60609 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC21.09■□□□□ 0.97
GFRA3O60609 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC21.09■□□□□ 0.97
GFRA3O60609 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
GFRA3O60609 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC21.09■□□□□ 0.97
GFRA3O60609 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC21.09■□□□□ 0.97
GFRA3O60609 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
GFRA3O60609 AP001412.1-201ENST00000608405 714 ntBASIC21.09■□□□□ 0.97
GFRA3O60609 AL049637.2-201ENST00000641778 930 ntBASIC21.09■□□□□ 0.97
GFRA3O60609 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
GFRA3O60609 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
GFRA3O60609 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC21.09■□□□□ 0.97
GFRA3O60609 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
GFRA3O60609 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
GFRA3O60609 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
GFRA3O60609 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
GFRA3O60609 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.97
GFRA3O60609 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC21.08■□□□□ 0.97
GFRA3O60609 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
GFRA3O60609 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC21.08■□□□□ 0.97
GFRA3O60609 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC21.08■□□□□ 0.97
GFRA3O60609 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
GFRA3O60609 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
GFRA3O60609 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
GFRA3O60609 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
GFRA3O60609 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
GFRA3O60609 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC21.07■□□□□ 0.96
GFRA3O60609 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC21.07■□□□□ 0.96
GFRA3O60609 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC21.07■□□□□ 0.96
GFRA3O60609 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC21.07■□□□□ 0.96
GFRA3O60609 AC069544.1-201ENST00000609399 999 ntBASIC21.07■□□□□ 0.96
GFRA3O60609 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms