Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SDCBPO00560 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SDCBPO00560 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SDCBPO00560 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC18.14■□□□□ 0.49
SDCBPO00560 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SDCBPO00560 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SDCBPO00560 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
SDCBPO00560 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SDCBPO00560 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SDCBPO00560 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SDCBPO00560 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC18.13■□□□□ 0.49
SDCBPO00560 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
SDCBPO00560 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SDCBPO00560 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SDCBPO00560 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SDCBPO00560 SRD5A1P1-201ENST00000442297 786 ntBASIC18.13■□□□□ 0.49
SDCBPO00560 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC18.13■□□□□ 0.49
SDCBPO00560 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC18.13■□□□□ 0.49
SDCBPO00560 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SDCBPO00560 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SDCBPO00560 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC18.13■□□□□ 0.49
SDCBPO00560 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SDCBPO00560 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SDCBPO00560 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC18.12■□□□□ 0.49
SDCBPO00560 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
SDCBPO00560 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
SDCBPO00560 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
SDCBPO00560 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SDCBPO00560 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SDCBPO00560 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
SDCBPO00560 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SDCBPO00560 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SDCBPO00560 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SDCBPO00560 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC18.12■□□□□ 0.49
SDCBPO00560 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC18.12■□□□□ 0.49
SDCBPO00560 SRR-208ENST00000576848 588 ntTSL 4 BASIC18.12■□□□□ 0.49
SDCBPO00560 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
SDCBPO00560 AL499627.2-201ENST00000606283 725 ntBASIC18.12■□□□□ 0.49
SDCBPO00560 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC18.12■□□□□ 0.49
SDCBPO00560 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SDCBPO00560 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
SDCBPO00560 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC18.12■□□□□ 0.49
SDCBPO00560 GATM-206ENST00000558336 1522 ntTSL 2 BASIC18.12■□□□□ 0.49
SDCBPO00560 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SDCBPO00560 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SDCBPO00560 TUB-203ENST00000534099 1759 ntTSL 2 BASIC18.12■□□□□ 0.49
SDCBPO00560 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SDCBPO00560 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SDCBPO00560 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SDCBPO00560 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SDCBPO00560 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC18.11■□□□□ 0.49
SDCBPO00560 AC099791.2-201ENST00000605725 427 ntBASIC18.11■□□□□ 0.49
SDCBPO00560 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
SDCBPO00560 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
SDCBPO00560 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC18.11■□□□□ 0.49
SDCBPO00560 FEM1AP4-201ENST00000443167 1987 ntBASIC18.11■□□□□ 0.49
SDCBPO00560 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC18.11■□□□□ 0.49
SDCBPO00560 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SDCBPO00560 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
SDCBPO00560 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SDCBPO00560 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC18.1■□□□□ 0.49
SDCBPO00560 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
SDCBPO00560 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC18.1■□□□□ 0.49
SDCBPO00560 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC18.1■□□□□ 0.49
SDCBPO00560 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC18.1■□□□□ 0.49
SDCBPO00560 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
SDCBPO00560 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SDCBPO00560 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SDCBPO00560 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SDCBPO00560 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC18.1■□□□□ 0.49
SDCBPO00560 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC18.1■□□□□ 0.49
SDCBPO00560 RASSF1-AS1-201ENST00000629828 790 ntBASIC18.1■□□□□ 0.49
SDCBPO00560 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SDCBPO00560 AL157384.1-201ENST00000445995 2473 ntBASIC18.1■□□□□ 0.49
SDCBPO00560 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SDCBPO00560 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SDCBPO00560 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SDCBPO00560 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SDCBPO00560 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
SDCBPO00560 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC18.09■□□□□ 0.49
SDCBPO00560 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC18.09■□□□□ 0.49
SDCBPO00560 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC18.09■□□□□ 0.49
SDCBPO00560 AC006455.2-201ENST00000429931 906 ntBASIC18.09■□□□□ 0.49
SDCBPO00560 pRNA.6-201ENST00000610482 90 ntBASIC18.09■□□□□ 0.49
SDCBPO00560 pRNA.5-201ENST00000612139 90 ntBASIC18.09■□□□□ 0.49
SDCBPO00560 pRNA.11-201ENST00000618423 90 ntBASIC18.09■□□□□ 0.49
SDCBPO00560 pRNA.13-201ENST00000619112 90 ntBASIC18.09■□□□□ 0.49
SDCBPO00560 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SDCBPO00560 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SDCBPO00560 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SDCBPO00560 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC18.09■□□□□ 0.49
SDCBPO00560 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC18.08■□□□□ 0.49
SDCBPO00560 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
SDCBPO00560 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC18.08■□□□□ 0.49
SDCBPO00560 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
SDCBPO00560 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SDCBPO00560 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC18.08■□□□□ 0.48
SDCBPO00560 RPP21-222ENST00000433076 577 ntTSL 2 BASIC18.08■□□□□ 0.48
SDCBPO00560 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC18.08■□□□□ 0.48
SDCBPO00560 TRIR-202ENST00000588213 841 ntTSL 3 BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms