Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL6A6A6NMZ7 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL6A6A6NMZ7 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC19.5■□□□□ 0.71
COL6A6A6NMZ7 DUSP8P4-201ENST00000399538 1761 ntBASIC19.5■□□□□ 0.71
COL6A6A6NMZ7 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL6A6A6NMZ7 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL6A6A6NMZ7 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL6A6A6NMZ7 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
COL6A6A6NMZ7 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL6A6A6NMZ7 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL6A6A6NMZ7 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL6A6A6NMZ7 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL6A6A6NMZ7 Z99916.2-201ENST00000604037 246 ntBASIC19.5■□□□□ 0.71
COL6A6A6NMZ7 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
COL6A6A6NMZ7 OXCT2P1-201ENST00000447263 1535 ntBASIC19.5■□□□□ 0.71
COL6A6A6NMZ7 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL6A6A6NMZ7 GATS-209ENST00000454084 1030 ntTSL 3 BASIC19.49■□□□□ 0.71
COL6A6A6NMZ7 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL6A6A6NMZ7 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.49■□□□□ 0.71
COL6A6A6NMZ7 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC19.49■□□□□ 0.71
COL6A6A6NMZ7 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC19.49■□□□□ 0.71
COL6A6A6NMZ7 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL6A6A6NMZ7 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC19.49■□□□□ 0.71
COL6A6A6NMZ7 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL6A6A6NMZ7 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
COL6A6A6NMZ7 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC19.49■□□□□ 0.71
COL6A6A6NMZ7 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL6A6A6NMZ7 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL6A6A6NMZ7 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
COL6A6A6NMZ7 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL6A6A6NMZ7 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL6A6A6NMZ7 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
COL6A6A6NMZ7 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC19.48■□□□□ 0.71
COL6A6A6NMZ7 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.48■□□□□ 0.71
COL6A6A6NMZ7 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC19.48■□□□□ 0.71
COL6A6A6NMZ7 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
COL6A6A6NMZ7 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
COL6A6A6NMZ7 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
COL6A6A6NMZ7 RPPH1-201ENST00000516869 333 ntBASIC19.48■□□□□ 0.71
COL6A6A6NMZ7 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL6A6A6NMZ7 AC008403.3-201ENST00000598924 454 ntBASIC19.48■□□□□ 0.71
COL6A6A6NMZ7 FAM197Y4-202ENST00000622692 608 ntBASIC19.48■□□□□ 0.71
COL6A6A6NMZ7 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL6A6A6NMZ7 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC19.47■□□□□ 0.71
COL6A6A6NMZ7 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL6A6A6NMZ7 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL6A6A6NMZ7 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL6A6A6NMZ7 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL6A6A6NMZ7 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL6A6A6NMZ7 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL6A6A6NMZ7 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL6A6A6NMZ7 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A6A6NMZ7 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A6A6NMZ7 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A6A6NMZ7 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC19.46■□□□□ 0.71
COL6A6A6NMZ7 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
COL6A6A6NMZ7 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
COL6A6A6NMZ7 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A6A6NMZ7 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A6A6NMZ7 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A6A6NMZ7 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A6A6NMZ7 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A6A6NMZ7 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A6A6NMZ7 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC19.46■□□□□ 0.71
COL6A6A6NMZ7 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A6A6NMZ7 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC19.46■□□□□ 0.71
COL6A6A6NMZ7 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC19.46■□□□□ 0.71
COL6A6A6NMZ7 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC19.46■□□□□ 0.71
COL6A6A6NMZ7 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A6A6NMZ7 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A6A6NMZ7 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC19.45■□□□□ 0.7
COL6A6A6NMZ7 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A6A6NMZ7 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC19.45■□□□□ 0.7
COL6A6A6NMZ7 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A6A6NMZ7 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A6A6NMZ7 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC19.45■□□□□ 0.7
COL6A6A6NMZ7 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
COL6A6A6NMZ7 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC19.45■□□□□ 0.7
COL6A6A6NMZ7 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC19.45■□□□□ 0.7
COL6A6A6NMZ7 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A6A6NMZ7 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC19.45■□□□□ 0.7
COL6A6A6NMZ7 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A6A6NMZ7 AC097493.4-201ENST00000641197 219 ntBASIC19.45■□□□□ 0.7
COL6A6A6NMZ7 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A6A6NMZ7 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A6A6NMZ7 RCN1P1-201ENST00000400413 996 ntBASIC19.44■□□□□ 0.7
COL6A6A6NMZ7 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC19.44■□□□□ 0.7
COL6A6A6NMZ7 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.44■□□□□ 0.7
COL6A6A6NMZ7 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC19.44■□□□□ 0.7
COL6A6A6NMZ7 C1QBPP2-201ENST00000528754 825 ntBASIC19.44■□□□□ 0.7
COL6A6A6NMZ7 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC19.44■□□□□ 0.7
COL6A6A6NMZ7 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
COL6A6A6NMZ7 CYP2T3P-201ENST00000601990 817 ntBASIC19.44■□□□□ 0.7
COL6A6A6NMZ7 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A6A6NMZ7 AC010980.2-201ENST00000587099 1412 ntBASIC19.44■□□□□ 0.7
COL6A6A6NMZ7 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A6A6NMZ7 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A6A6NMZ7 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A6A6NMZ7 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A6A6NMZ7 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms