Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
SHANK1Q9Y566 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHANK1Q9Y566 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.5■□□□□ 0.71
SHANK1Q9Y566 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
SHANK1Q9Y566 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.5■□□□□ 0.71
SHANK1Q9Y566 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC19.5■□□□□ 0.71
SHANK1Q9Y566 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHANK1Q9Y566 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHANK1Q9Y566 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC19.49■□□□□ 0.71
SHANK1Q9Y566 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19.49■□□□□ 0.71
SHANK1Q9Y566 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.49■□□□□ 0.71
SHANK1Q9Y566 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SHANK1Q9Y566 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC19.49■□□□□ 0.71
SHANK1Q9Y566 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC19.49■□□□□ 0.71
SHANK1Q9Y566 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHANK1Q9Y566 AC105036.2-201ENST00000569468 176 ntBASIC19.49■□□□□ 0.71
SHANK1Q9Y566 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
SHANK1Q9Y566 PXK-203ENST00000383715 1756 ntTSL 5 BASIC19.48■□□□□ 0.71
SHANK1Q9Y566 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHANK1Q9Y566 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
SHANK1Q9Y566 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHANK1Q9Y566 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHANK1Q9Y566 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC19.48■□□□□ 0.71
SHANK1Q9Y566 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
SHANK1Q9Y566 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC19.48■□□□□ 0.71
SHANK1Q9Y566 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHANK1Q9Y566 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHANK1Q9Y566 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
SHANK1Q9Y566 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SHANK1Q9Y566 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC19.47■□□□□ 0.71
SHANK1Q9Y566 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHANK1Q9Y566 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHANK1Q9Y566 AC013268.1-206ENST00000638368 961 ntBASIC19.47■□□□□ 0.71
SHANK1Q9Y566 AC112229.1-201ENST00000639295 961 ntBASIC19.47■□□□□ 0.71
SHANK1Q9Y566 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SHANK1Q9Y566 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHANK1Q9Y566 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHANK1Q9Y566 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
SHANK1Q9Y566 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
SHANK1Q9Y566 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHANK1Q9Y566 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHANK1Q9Y566 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SHANK1Q9Y566 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
SHANK1Q9Y566 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC19.47■□□□□ 0.71
SHANK1Q9Y566 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SHANK1Q9Y566 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHANK1Q9Y566 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
SHANK1Q9Y566 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHANK1Q9Y566 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
SHANK1Q9Y566 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19.46■□□□□ 0.71
SHANK1Q9Y566 AC083880.1-201ENST00000608266 535 ntBASIC19.46■□□□□ 0.71
SHANK1Q9Y566 AC010536.3-201ENST00000620306 533 ntBASIC19.46■□□□□ 0.71
SHANK1Q9Y566 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SHANK1Q9Y566 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC19.46■□□□□ 0.71
SHANK1Q9Y566 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SHANK1Q9Y566 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SHANK1Q9Y566 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
SHANK1Q9Y566 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC19.46■□□□□ 0.71
SHANK1Q9Y566 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SHANK1Q9Y566 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SHANK1Q9Y566 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SHANK1Q9Y566 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SHANK1Q9Y566 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.46■□□□□ 0.71
SHANK1Q9Y566 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.46■□□□□ 0.71
SHANK1Q9Y566 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SHANK1Q9Y566 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC19.45■□□□□ 0.7
SHANK1Q9Y566 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SHANK1Q9Y566 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC19.45■□□□□ 0.7
SHANK1Q9Y566 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHANK1Q9Y566 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC19.45■□□□□ 0.7
SHANK1Q9Y566 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHANK1Q9Y566 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.45■□□□□ 0.7
SHANK1Q9Y566 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SHANK1Q9Y566 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SHANK1Q9Y566 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC19.45■□□□□ 0.7
SHANK1Q9Y566 AP001160.3-201ENST00000601484 763 ntBASIC19.45■□□□□ 0.7
SHANK1Q9Y566 C9orf163-202ENST00000624034 2573 ntBASIC19.45■□□□□ 0.7
SHANK1Q9Y566 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SHANK1Q9Y566 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
SHANK1Q9Y566 CYP2T1P-201ENST00000432607 1285 ntBASIC19.44■□□□□ 0.7
SHANK1Q9Y566 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC19.44■□□□□ 0.7
SHANK1Q9Y566 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SHANK1Q9Y566 MKRN4P-201ENST00000444706 1521 ntBASIC19.44■□□□□ 0.7
SHANK1Q9Y566 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SHANK1Q9Y566 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SHANK1Q9Y566 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
SHANK1Q9Y566 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.44■□□□□ 0.7
SHANK1Q9Y566 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.44■□□□□ 0.7
SHANK1Q9Y566 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
SHANK1Q9Y566 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.44■□□□□ 0.7
SHANK1Q9Y566 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SHANK1Q9Y566 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC19.44■□□□□ 0.7
SHANK1Q9Y566 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC19.44■□□□□ 0.7
SHANK1Q9Y566 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
SHANK1Q9Y566 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHANK1Q9Y566 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHANK1Q9Y566 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SHANK1Q9Y566 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC19.43■□□□□ 0.7
SHANK1Q9Y566 AC068338.2-201ENST00000563278 1430 ntBASIC19.43■□□□□ 0.7
SHANK1Q9Y566 AC138907.5-202ENST00000569484 235 ntBASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms