Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
PIF1Q9H611 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PIF1Q9H611 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
PIF1Q9H611 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
PIF1Q9H611 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.42■□□□□ 0.86
PIF1Q9H611 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
PIF1Q9H611 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PIF1Q9H611 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
PIF1Q9H611 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PIF1Q9H611 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
PIF1Q9H611 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
PIF1Q9H611 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.42■□□□□ 0.86
PIF1Q9H611 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.42■□□□□ 0.86
PIF1Q9H611 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PIF1Q9H611 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.42■□□□□ 0.86
PIF1Q9H611 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PIF1Q9H611 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
PIF1Q9H611 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PIF1Q9H611 AC026471.6-201ENST00000622954 1905 ntBASIC20.41■□□□□ 0.86
PIF1Q9H611 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.41■□□□□ 0.86
PIF1Q9H611 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PIF1Q9H611 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PIF1Q9H611 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
PIF1Q9H611 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.41■□□□□ 0.86
PIF1Q9H611 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.41■□□□□ 0.86
PIF1Q9H611 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC20.41■□□□□ 0.86
PIF1Q9H611 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC20.41■□□□□ 0.86
PIF1Q9H611 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
PIF1Q9H611 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.41■□□□□ 0.86
PIF1Q9H611 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PIF1Q9H611 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
PIF1Q9H611 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
PIF1Q9H611 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.41■□□□□ 0.86
PIF1Q9H611 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
PIF1Q9H611 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PIF1Q9H611 AL157384.1-201ENST00000445995 2473 ntBASIC20.41■□□□□ 0.86
PIF1Q9H611 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PIF1Q9H611 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PIF1Q9H611 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
PIF1Q9H611 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PIF1Q9H611 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.4■□□□□ 0.86
PIF1Q9H611 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.4■□□□□ 0.86
PIF1Q9H611 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.4■□□□□ 0.86
PIF1Q9H611 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
PIF1Q9H611 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.4■□□□□ 0.86
PIF1Q9H611 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.4■□□□□ 0.86
PIF1Q9H611 MTDHP2-201ENST00000601468 714 ntBASIC20.4■□□□□ 0.86
PIF1Q9H611 C17orf82-201ENST00000623772 1530 ntBASIC20.4■□□□□ 0.86
PIF1Q9H611 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
PIF1Q9H611 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
PIF1Q9H611 FEM1AP4-201ENST00000443167 1987 ntBASIC20.39■□□□□ 0.86
PIF1Q9H611 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PIF1Q9H611 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.39■□□□□ 0.86
PIF1Q9H611 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PIF1Q9H611 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
PIF1Q9H611 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
PIF1Q9H611 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
PIF1Q9H611 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.39■□□□□ 0.85
PIF1Q9H611 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC20.39■□□□□ 0.85
PIF1Q9H611 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
PIF1Q9H611 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PIF1Q9H611 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.39■□□□□ 0.85
PIF1Q9H611 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.39■□□□□ 0.85
PIF1Q9H611 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PIF1Q9H611 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PIF1Q9H611 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
PIF1Q9H611 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
PIF1Q9H611 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
PIF1Q9H611 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PIF1Q9H611 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PIF1Q9H611 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.39■□□□□ 0.85
PIF1Q9H611 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.38■□□□□ 0.85
PIF1Q9H611 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.38■□□□□ 0.85
PIF1Q9H611 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PIF1Q9H611 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
PIF1Q9H611 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
PIF1Q9H611 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PIF1Q9H611 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
PIF1Q9H611 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
PIF1Q9H611 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PIF1Q9H611 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC20.38■□□□□ 0.85
PIF1Q9H611 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
PIF1Q9H611 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PIF1Q9H611 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
PIF1Q9H611 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
PIF1Q9H611 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PIF1Q9H611 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PIF1Q9H611 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
PIF1Q9H611 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
PIF1Q9H611 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PIF1Q9H611 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
PIF1Q9H611 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PIF1Q9H611 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.38■□□□□ 0.85
PIF1Q9H611 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PIF1Q9H611 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.37■□□□□ 0.85
PIF1Q9H611 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PIF1Q9H611 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
PIF1Q9H611 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.37■□□□□ 0.85
PIF1Q9H611 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC20.37■□□□□ 0.85
PIF1Q9H611 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms