Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TRIM4Q9C037 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
TRIM4Q9C037 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC21.21■□□□□ 0.99
TRIM4Q9C037 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRIM4Q9C037 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRIM4Q9C037 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.21■□□□□ 0.99
TRIM4Q9C037 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.21■□□□□ 0.99
TRIM4Q9C037 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.99
TRIM4Q9C037 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.99
TRIM4Q9C037 AC079630.1-202ENST00000618127 1840 ntBASIC21.2■□□□□ 0.98
TRIM4Q9C037 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM4Q9C037 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.2■□□□□ 0.98
TRIM4Q9C037 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM4Q9C037 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM4Q9C037 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.2■□□□□ 0.98
TRIM4Q9C037 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC21.2■□□□□ 0.98
TRIM4Q9C037 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC21.2■□□□□ 0.98
TRIM4Q9C037 PTMA-205ENST00000410064 814 ntTSL 2 BASIC21.2■□□□□ 0.98
TRIM4Q9C037 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
TRIM4Q9C037 SP2-202ENST00000613139 908 ntTSL 5 BASIC21.2■□□□□ 0.98
TRIM4Q9C037 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
TRIM4Q9C037 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
TRIM4Q9C037 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM4Q9C037 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
TRIM4Q9C037 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM4Q9C037 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM4Q9C037 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM4Q9C037 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM4Q9C037 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRIM4Q9C037 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.19■□□□□ 0.98
TRIM4Q9C037 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.19■□□□□ 0.98
TRIM4Q9C037 SYT6-210ENST00000641643 1587 ntBASIC21.19■□□□□ 0.98
TRIM4Q9C037 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
TRIM4Q9C037 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRIM4Q9C037 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC21.19■□□□□ 0.98
TRIM4Q9C037 AC008764.7-201ENST00000593779 1081 ntBASIC21.19■□□□□ 0.98
TRIM4Q9C037 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.19■□□□□ 0.98
TRIM4Q9C037 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRIM4Q9C037 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21.19■□□□□ 0.98
TRIM4Q9C037 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRIM4Q9C037 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRIM4Q9C037 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC21.19■□□□□ 0.98
TRIM4Q9C037 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.19■□□□□ 0.98
TRIM4Q9C037 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.19■□□□□ 0.98
TRIM4Q9C037 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.18■□□□□ 0.98
TRIM4Q9C037 AF106564.1-201ENST00000607058 2553 ntBASIC21.18■□□□□ 0.98
TRIM4Q9C037 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.18■□□□□ 0.98
TRIM4Q9C037 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM4Q9C037 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
TRIM4Q9C037 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
TRIM4Q9C037 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM4Q9C037 DUX4L19-201ENST00000557448 1267 ntBASIC21.18■□□□□ 0.98
TRIM4Q9C037 AC092437.1-201ENST00000624794 1048 ntBASIC21.18■□□□□ 0.98
TRIM4Q9C037 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
TRIM4Q9C037 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM4Q9C037 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC21.17■□□□□ 0.98
TRIM4Q9C037 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM4Q9C037 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC21.17■□□□□ 0.98
TRIM4Q9C037 AC004911.1-201ENST00000416316 871 ntBASIC21.17■□□□□ 0.98
TRIM4Q9C037 RHOF-204ENST00000537265 699 ntTSL 2 BASIC21.17■□□□□ 0.98
TRIM4Q9C037 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM4Q9C037 AC027682.1-201ENST00000562846 899 ntBASIC21.17■□□□□ 0.98
TRIM4Q9C037 MIR6722-201ENST00000617286 78 ntBASIC21.17■□□□□ 0.98
TRIM4Q9C037 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.17■□□□□ 0.98
TRIM4Q9C037 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC21.17■□□□□ 0.98
TRIM4Q9C037 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM4Q9C037 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21.17■□□□□ 0.98
TRIM4Q9C037 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM4Q9C037 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.17■□□□□ 0.98
TRIM4Q9C037 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
TRIM4Q9C037 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM4Q9C037 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM4Q9C037 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM4Q9C037 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC21.16■□□□□ 0.98
TRIM4Q9C037 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM4Q9C037 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.16■□□□□ 0.98
TRIM4Q9C037 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
TRIM4Q9C037 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
TRIM4Q9C037 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
TRIM4Q9C037 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM4Q9C037 HACD1-201ENST00000326961 773 ntTSL 2 BASIC21.16■□□□□ 0.98
TRIM4Q9C037 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC21.16■□□□□ 0.98
TRIM4Q9C037 AC034268.1-201ENST00000441047 882 ntBASIC21.16■□□□□ 0.98
TRIM4Q9C037 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC21.16■□□□□ 0.98
TRIM4Q9C037 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC21.16■□□□□ 0.98
TRIM4Q9C037 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM4Q9C037 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM4Q9C037 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM4Q9C037 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM4Q9C037 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
TRIM4Q9C037 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM4Q9C037 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.16■□□□□ 0.98
TRIM4Q9C037 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM4Q9C037 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM4Q9C037 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM4Q9C037 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
TRIM4Q9C037 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM4Q9C037 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.15■□□□□ 0.98
TRIM4Q9C037 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC21.15■□□□□ 0.98
TRIM4Q9C037 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms