Protein–RNA interactions for Protein: Q9BXY4

RSPO3, R-spondin-3, humanhuman

Predicted RBP Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RSPO3Q9BXY4 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.82■□□□□ 0.76
RSPO3Q9BXY4 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.82■□□□□ 0.76
RSPO3Q9BXY4 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.82■□□□□ 0.76
RSPO3Q9BXY4 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RSPO3Q9BXY4 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC19.82■□□□□ 0.76
RSPO3Q9BXY4 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
RSPO3Q9BXY4 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC19.81■□□□□ 0.76
RSPO3Q9BXY4 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
RSPO3Q9BXY4 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RSPO3Q9BXY4 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
RSPO3Q9BXY4 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
RSPO3Q9BXY4 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RSPO3Q9BXY4 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
RSPO3Q9BXY4 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
RSPO3Q9BXY4 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RSPO3Q9BXY4 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RSPO3Q9BXY4 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
RSPO3Q9BXY4 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RSPO3Q9BXY4 SNX3-202ENST00000349379 890 ntTSL 2 BASIC19.81■□□□□ 0.76
RSPO3Q9BXY4 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC19.81■□□□□ 0.76
RSPO3Q9BXY4 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.81■□□□□ 0.76
RSPO3Q9BXY4 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC19.81■□□□□ 0.76
RSPO3Q9BXY4 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
RSPO3Q9BXY4 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RSPO3Q9BXY4 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RSPO3Q9BXY4 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RSPO3Q9BXY4 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC19.81■□□□□ 0.76
RSPO3Q9BXY4 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RSPO3Q9BXY4 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RSPO3Q9BXY4 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19.8■□□□□ 0.76
RSPO3Q9BXY4 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RSPO3Q9BXY4 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RSPO3Q9BXY4 AC092171.4-201ENST00000609130 632 ntBASIC19.8■□□□□ 0.76
RSPO3Q9BXY4 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RSPO3Q9BXY4 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RSPO3Q9BXY4 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RSPO3Q9BXY4 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RSPO3Q9BXY4 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RSPO3Q9BXY4 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
RSPO3Q9BXY4 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
RSPO3Q9BXY4 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.79■□□□□ 0.76
RSPO3Q9BXY4 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
RSPO3Q9BXY4 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RSPO3Q9BXY4 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RSPO3Q9BXY4 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
RSPO3Q9BXY4 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC19.79■□□□□ 0.76
RSPO3Q9BXY4 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
RSPO3Q9BXY4 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC19.79■□□□□ 0.76
RSPO3Q9BXY4 AC011298.3-201ENST00000615796 283 ntBASIC19.79■□□□□ 0.76
RSPO3Q9BXY4 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC19.79■□□□□ 0.76
RSPO3Q9BXY4 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC19.79■□□□□ 0.76
RSPO3Q9BXY4 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RSPO3Q9BXY4 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
RSPO3Q9BXY4 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
RSPO3Q9BXY4 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
RSPO3Q9BXY4 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.79■□□□□ 0.76
RSPO3Q9BXY4 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
RSPO3Q9BXY4 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
RSPO3Q9BXY4 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
RSPO3Q9BXY4 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RSPO3Q9BXY4 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
RSPO3Q9BXY4 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
RSPO3Q9BXY4 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC19.78■□□□□ 0.76
RSPO3Q9BXY4 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC19.78■□□□□ 0.76
RSPO3Q9BXY4 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC19.78■□□□□ 0.76
RSPO3Q9BXY4 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC19.78■□□□□ 0.76
RSPO3Q9BXY4 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
RSPO3Q9BXY4 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.78■□□□□ 0.76
RSPO3Q9BXY4 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RSPO3Q9BXY4 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.78■□□□□ 0.76
RSPO3Q9BXY4 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RSPO3Q9BXY4 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC19.77■□□□□ 0.76
RSPO3Q9BXY4 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
RSPO3Q9BXY4 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
RSPO3Q9BXY4 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
RSPO3Q9BXY4 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
RSPO3Q9BXY4 SF1-220ENST00000626028 704 ntTSL 2 BASIC19.77■□□□□ 0.76
RSPO3Q9BXY4 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
RSPO3Q9BXY4 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
RSPO3Q9BXY4 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
RSPO3Q9BXY4 AC003102.1-202ENST00000563394 1796 ntBASIC19.77■□□□□ 0.76
RSPO3Q9BXY4 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.77■□□□□ 0.75
RSPO3Q9BXY4 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
RSPO3Q9BXY4 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.77■□□□□ 0.75
RSPO3Q9BXY4 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
RSPO3Q9BXY4 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RSPO3Q9BXY4 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RSPO3Q9BXY4 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
RSPO3Q9BXY4 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RSPO3Q9BXY4 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
RSPO3Q9BXY4 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
RSPO3Q9BXY4 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC19.76■□□□□ 0.75
RSPO3Q9BXY4 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RSPO3Q9BXY4 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RSPO3Q9BXY4 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
RSPO3Q9BXY4 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.76■□□□□ 0.75
RSPO3Q9BXY4 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
RSPO3Q9BXY4 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RSPO3Q9BXY4 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
RSPO3Q9BXY4 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms