Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 PARL-206ENST00000435888 1098 ntTSL 5 BASIC19.72■□□□□ 0.75
TIMP4Q99727 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC19.72■□□□□ 0.75
TIMP4Q99727 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TIMP4Q99727 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TIMP4Q99727 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC19.72■□□□□ 0.75
TIMP4Q99727 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC19.72■□□□□ 0.75
TIMP4Q99727 RAB43-208ENST00000615093 783 ntTSL 5 BASIC19.72■□□□□ 0.75
TIMP4Q99727 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC19.72■□□□□ 0.75
TIMP4Q99727 AL031602.1-201ENST00000633169 911 ntBASIC19.72■□□□□ 0.75
TIMP4Q99727 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC19.72■□□□□ 0.75
TIMP4Q99727 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
TIMP4Q99727 AL024507.2-201ENST00000606070 2574 ntBASIC19.72■□□□□ 0.75
TIMP4Q99727 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
TIMP4Q99727 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TIMP4Q99727 FBXW4P1-201ENST00000426721 2239 ntBASIC19.71■□□□□ 0.75
TIMP4Q99727 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TIMP4Q99727 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
TIMP4Q99727 AC034268.1-201ENST00000441047 882 ntBASIC19.71■□□□□ 0.75
TIMP4Q99727 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.71■□□□□ 0.75
TIMP4Q99727 MPST-204ENST00000404393 1329 ntTSL 5 BASIC19.71■□□□□ 0.75
TIMP4Q99727 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
TIMP4Q99727 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC19.7■□□□□ 0.74
TIMP4Q99727 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
TIMP4Q99727 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TIMP4Q99727 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC19.7■□□□□ 0.74
TIMP4Q99727 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
TIMP4Q99727 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
TIMP4Q99727 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
TIMP4Q99727 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
TIMP4Q99727 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TIMP4Q99727 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC19.7■□□□□ 0.74
TIMP4Q99727 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TIMP4Q99727 AC087239.1-201ENST00000622671 572 ntBASIC19.7■□□□□ 0.74
TIMP4Q99727 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC19.7■□□□□ 0.74
TIMP4Q99727 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TIMP4Q99727 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TIMP4Q99727 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC19.7■□□□□ 0.74
TIMP4Q99727 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.7■□□□□ 0.74
TIMP4Q99727 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TIMP4Q99727 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TIMP4Q99727 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TIMP4Q99727 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.7■□□□□ 0.74
TIMP4Q99727 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TIMP4Q99727 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TIMP4Q99727 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TIMP4Q99727 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC19.69■□□□□ 0.74
TIMP4Q99727 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC19.69■□□□□ 0.74
TIMP4Q99727 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TIMP4Q99727 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC19.69■□□□□ 0.74
TIMP4Q99727 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC19.69■□□□□ 0.74
TIMP4Q99727 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.69■□□□□ 0.74
TIMP4Q99727 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TIMP4Q99727 AC010141.3-201ENST00000456659 717 ntBASIC19.69■□□□□ 0.74
TIMP4Q99727 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC19.69■□□□□ 0.74
TIMP4Q99727 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC19.69■□□□□ 0.74
TIMP4Q99727 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TIMP4Q99727 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TIMP4Q99727 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.68■□□□□ 0.74
TIMP4Q99727 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TIMP4Q99727 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TIMP4Q99727 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TIMP4Q99727 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TIMP4Q99727 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TIMP4Q99727 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TIMP4Q99727 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TIMP4Q99727 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TIMP4Q99727 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TIMP4Q99727 NT5C3AP1-201ENST00000394500 1012 ntBASIC19.68■□□□□ 0.74
TIMP4Q99727 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC19.68■□□□□ 0.74
TIMP4Q99727 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC19.68■□□□□ 0.74
TIMP4Q99727 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC19.68■□□□□ 0.74
TIMP4Q99727 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TIMP4Q99727 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.68■□□□□ 0.74
TIMP4Q99727 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
TIMP4Q99727 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TIMP4Q99727 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TIMP4Q99727 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC19.67■□□□□ 0.74
TIMP4Q99727 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TIMP4Q99727 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
TIMP4Q99727 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC19.67■□□□□ 0.74
TIMP4Q99727 USP45-205ENST00000472914 1617 ntTSL 5 BASIC19.67■□□□□ 0.74
TIMP4Q99727 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TIMP4Q99727 HACD1-201ENST00000326961 773 ntTSL 2 BASIC19.67■□□□□ 0.74
TIMP4Q99727 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.67■□□□□ 0.74
TIMP4Q99727 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TIMP4Q99727 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TIMP4Q99727 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TIMP4Q99727 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
TIMP4Q99727 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TIMP4Q99727 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TIMP4Q99727 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
TIMP4Q99727 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
TIMP4Q99727 MFF-208ENST00000409616 1247 ntTSL 5 BASIC19.66■□□□□ 0.74
TIMP4Q99727 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.66■□□□□ 0.74
TIMP4Q99727 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.66■□□□□ 0.74
TIMP4Q99727 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TIMP4Q99727 DUX4L2-201ENST00000561772 1275 ntBASIC19.66■□□□□ 0.74
TIMP4Q99727 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.66■□□□□ 0.74
TIMP4Q99727 DUX4L6-201ENST00000626483 1275 ntBASIC19.66■□□□□ 0.74
TIMP4Q99727 DUX4L1-201ENST00000627662 1275 ntBASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms