Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
VMP1Q96GC9 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
VMP1Q96GC9 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.45■□□□□ 0.86
VMP1Q96GC9 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
VMP1Q96GC9 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.45■□□□□ 0.86
VMP1Q96GC9 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.45■□□□□ 0.86
VMP1Q96GC9 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.45■□□□□ 0.86
VMP1Q96GC9 AC068587.7-201ENST00000641602 218 ntBASIC20.45■□□□□ 0.86
VMP1Q96GC9 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
VMP1Q96GC9 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
VMP1Q96GC9 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
VMP1Q96GC9 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VMP1Q96GC9 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
VMP1Q96GC9 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.45■□□□□ 0.86
VMP1Q96GC9 TSPY26P-201ENST00000476365 1326 ntBASIC20.45■□□□□ 0.86
VMP1Q96GC9 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VMP1Q96GC9 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
VMP1Q96GC9 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.45■□□□□ 0.86
VMP1Q96GC9 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VMP1Q96GC9 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
VMP1Q96GC9 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.44■□□□□ 0.86
VMP1Q96GC9 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VMP1Q96GC9 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
VMP1Q96GC9 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.44■□□□□ 0.86
VMP1Q96GC9 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VMP1Q96GC9 LGR4-203ENST00000480977 492 ntTSL 2 BASIC20.44■□□□□ 0.86
VMP1Q96GC9 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.44■□□□□ 0.86
VMP1Q96GC9 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VMP1Q96GC9 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VMP1Q96GC9 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VMP1Q96GC9 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VMP1Q96GC9 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
VMP1Q96GC9 IRS3P-201ENST00000223076 1006 ntBASIC20.43■□□□□ 0.86
VMP1Q96GC9 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VMP1Q96GC9 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VMP1Q96GC9 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
VMP1Q96GC9 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VMP1Q96GC9 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.43■□□□□ 0.86
VMP1Q96GC9 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VMP1Q96GC9 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VMP1Q96GC9 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
VMP1Q96GC9 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VMP1Q96GC9 AC242852.2-201ENST00000615738 1807 ntBASIC20.42■□□□□ 0.86
VMP1Q96GC9 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
VMP1Q96GC9 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
VMP1Q96GC9 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.42■□□□□ 0.86
VMP1Q96GC9 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC20.42■□□□□ 0.86
VMP1Q96GC9 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
VMP1Q96GC9 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.42■□□□□ 0.86
VMP1Q96GC9 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.42■□□□□ 0.86
VMP1Q96GC9 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VMP1Q96GC9 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VMP1Q96GC9 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VMP1Q96GC9 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
VMP1Q96GC9 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VMP1Q96GC9 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.41■□□□□ 0.86
VMP1Q96GC9 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.41■□□□□ 0.86
VMP1Q96GC9 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VMP1Q96GC9 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
VMP1Q96GC9 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VMP1Q96GC9 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
VMP1Q96GC9 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
VMP1Q96GC9 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.41■□□□□ 0.86
VMP1Q96GC9 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VMP1Q96GC9 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.41■□□□□ 0.86
VMP1Q96GC9 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
VMP1Q96GC9 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VMP1Q96GC9 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VMP1Q96GC9 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.4■□□□□ 0.86
VMP1Q96GC9 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
VMP1Q96GC9 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VMP1Q96GC9 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.4■□□□□ 0.86
VMP1Q96GC9 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.4■□□□□ 0.86
VMP1Q96GC9 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC20.4■□□□□ 0.86
VMP1Q96GC9 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.4■□□□□ 0.86
VMP1Q96GC9 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
VMP1Q96GC9 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.4■□□□□ 0.86
VMP1Q96GC9 AC087239.1-201ENST00000622671 572 ntBASIC20.4■□□□□ 0.86
VMP1Q96GC9 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VMP1Q96GC9 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.39■□□□□ 0.86
VMP1Q96GC9 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
VMP1Q96GC9 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.39■□□□□ 0.85
VMP1Q96GC9 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.39■□□□□ 0.85
VMP1Q96GC9 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VMP1Q96GC9 MIR935-201ENST00000401179 91 ntBASIC20.39■□□□□ 0.85
VMP1Q96GC9 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VMP1Q96GC9 AL031602.1-201ENST00000633169 911 ntBASIC20.39■□□□□ 0.85
VMP1Q96GC9 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
VMP1Q96GC9 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
VMP1Q96GC9 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VMP1Q96GC9 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.39■□□□□ 0.85
VMP1Q96GC9 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VMP1Q96GC9 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
VMP1Q96GC9 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
VMP1Q96GC9 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.38■□□□□ 0.85
VMP1Q96GC9 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.38■□□□□ 0.85
VMP1Q96GC9 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VMP1Q96GC9 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VMP1Q96GC9 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.38■□□□□ 0.85
VMP1Q96GC9 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms