Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
LMX1AQ8TE12 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
LMX1AQ8TE12 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.97■□□□□ 0.95
LMX1AQ8TE12 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.97■□□□□ 0.95
LMX1AQ8TE12 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LMX1AQ8TE12 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
LMX1AQ8TE12 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LMX1AQ8TE12 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
LMX1AQ8TE12 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LMX1AQ8TE12 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
LMX1AQ8TE12 AC007322.1-201ENST00000426983 750 ntBASIC20.96■□□□□ 0.95
LMX1AQ8TE12 BRI3-207ENST00000539286 699 ntTSL 2 BASIC20.96■□□□□ 0.95
LMX1AQ8TE12 DUX4L16-201ENST00000555130 1264 ntBASIC20.96■□□□□ 0.95
LMX1AQ8TE12 EMC9-206ENST00000560403 872 ntTSL 2 BASIC20.96■□□□□ 0.95
LMX1AQ8TE12 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC20.96■□□□□ 0.95
LMX1AQ8TE12 AC231657.2-201ENST00000624556 255 ntBASIC20.96■□□□□ 0.95
LMX1AQ8TE12 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LMX1AQ8TE12 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
LMX1AQ8TE12 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
LMX1AQ8TE12 AC093323.1-202ENST00000635031 2045 ntBASIC20.95■□□□□ 0.94
LMX1AQ8TE12 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LMX1AQ8TE12 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LMX1AQ8TE12 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LMX1AQ8TE12 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.95■□□□□ 0.94
LMX1AQ8TE12 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LMX1AQ8TE12 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LMX1AQ8TE12 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LMX1AQ8TE12 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
LMX1AQ8TE12 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LMX1AQ8TE12 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
LMX1AQ8TE12 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LMX1AQ8TE12 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
LMX1AQ8TE12 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.95■□□□□ 0.94
LMX1AQ8TE12 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LMX1AQ8TE12 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LMX1AQ8TE12 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
LMX1AQ8TE12 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
LMX1AQ8TE12 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LMX1AQ8TE12 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
LMX1AQ8TE12 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.94■□□□□ 0.94
LMX1AQ8TE12 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
LMX1AQ8TE12 AC010141.2-201ENST00000452426 721 ntBASIC20.94■□□□□ 0.94
LMX1AQ8TE12 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LMX1AQ8TE12 AC138907.5-202ENST00000569484 235 ntBASIC20.94■□□□□ 0.94
LMX1AQ8TE12 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.94■□□□□ 0.94
LMX1AQ8TE12 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LMX1AQ8TE12 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
LMX1AQ8TE12 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
LMX1AQ8TE12 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LMX1AQ8TE12 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
LMX1AQ8TE12 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC20.93■□□□□ 0.94
LMX1AQ8TE12 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC20.93■□□□□ 0.94
LMX1AQ8TE12 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC20.93■□□□□ 0.94
LMX1AQ8TE12 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
LMX1AQ8TE12 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC20.93■□□□□ 0.94
LMX1AQ8TE12 AC005181.1-201ENST00000604782 1256 ntBASIC20.93■□□□□ 0.94
LMX1AQ8TE12 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LMX1AQ8TE12 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LMX1AQ8TE12 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.93■□□□□ 0.94
LMX1AQ8TE12 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
LMX1AQ8TE12 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.93■□□□□ 0.94
LMX1AQ8TE12 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LMX1AQ8TE12 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LMX1AQ8TE12 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LMX1AQ8TE12 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LMX1AQ8TE12 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC20.92■□□□□ 0.94
LMX1AQ8TE12 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC20.92■□□□□ 0.94
LMX1AQ8TE12 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC20.92■□□□□ 0.94
LMX1AQ8TE12 TFG-210ENST00000620299 1289 ntTSL 5 BASIC20.92■□□□□ 0.94
LMX1AQ8TE12 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LMX1AQ8TE12 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LMX1AQ8TE12 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
LMX1AQ8TE12 AP006587.3-201ENST00000525742 1516 ntBASIC20.92■□□□□ 0.94
LMX1AQ8TE12 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.92■□□□□ 0.94
LMX1AQ8TE12 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.92■□□□□ 0.94
LMX1AQ8TE12 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LMX1AQ8TE12 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.92■□□□□ 0.94
LMX1AQ8TE12 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC20.91■□□□□ 0.94
LMX1AQ8TE12 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
LMX1AQ8TE12 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
LMX1AQ8TE12 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
LMX1AQ8TE12 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.91■□□□□ 0.94
LMX1AQ8TE12 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC20.91■□□□□ 0.94
LMX1AQ8TE12 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
LMX1AQ8TE12 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.91■□□□□ 0.94
LMX1AQ8TE12 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC20.91■□□□□ 0.94
LMX1AQ8TE12 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC20.91■□□□□ 0.94
LMX1AQ8TE12 AL121832.2-201ENST00000610979 668 ntBASIC20.91■□□□□ 0.94
LMX1AQ8TE12 AL050303.2-201ENST00000619798 666 ntBASIC20.91■□□□□ 0.94
LMX1AQ8TE12 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.9■□□□□ 0.94
LMX1AQ8TE12 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
LMX1AQ8TE12 AC137767.1-201ENST00000602918 1920 ntBASIC20.9■□□□□ 0.94
LMX1AQ8TE12 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.9■□□□□ 0.94
LMX1AQ8TE12 AC087742.1-201ENST00000575880 1738 ntBASIC20.9■□□□□ 0.94
LMX1AQ8TE12 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.9■□□□□ 0.94
LMX1AQ8TE12 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LMX1AQ8TE12 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LMX1AQ8TE12 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LMX1AQ8TE12 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC20.9■□□□□ 0.94
LMX1AQ8TE12 AC083906.2-201ENST00000511578 360 ntBASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms