Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.6■□□□□ 0.89
TRIM40Q6P9F5 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM40Q6P9F5 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.59■□□□□ 0.89
TRIM40Q6P9F5 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM40Q6P9F5 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM40Q6P9F5 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM40Q6P9F5 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM40Q6P9F5 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM40Q6P9F5 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.59■□□□□ 0.89
TRIM40Q6P9F5 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.59■□□□□ 0.89
TRIM40Q6P9F5 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.59■□□□□ 0.89
TRIM40Q6P9F5 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM40Q6P9F5 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM40Q6P9F5 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM40Q6P9F5 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.59■□□□□ 0.89
TRIM40Q6P9F5 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.59■□□□□ 0.89
TRIM40Q6P9F5 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.89
TRIM40Q6P9F5 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM40Q6P9F5 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM40Q6P9F5 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM40Q6P9F5 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.58■□□□□ 0.89
TRIM40Q6P9F5 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM40Q6P9F5 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM40Q6P9F5 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.58■□□□□ 0.89
TRIM40Q6P9F5 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.58■□□□□ 0.89
TRIM40Q6P9F5 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.58■□□□□ 0.89
TRIM40Q6P9F5 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM40Q6P9F5 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.58■□□□□ 0.89
TRIM40Q6P9F5 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM40Q6P9F5 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.58■□□□□ 0.89
TRIM40Q6P9F5 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.58■□□□□ 0.88
TRIM40Q6P9F5 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
TRIM40Q6P9F5 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
TRIM40Q6P9F5 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.58■□□□□ 0.88
TRIM40Q6P9F5 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM40Q6P9F5 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM40Q6P9F5 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM40Q6P9F5 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM40Q6P9F5 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM40Q6P9F5 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM40Q6P9F5 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM40Q6P9F5 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.57■□□□□ 0.88
TRIM40Q6P9F5 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
TRIM40Q6P9F5 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.57■□□□□ 0.88
TRIM40Q6P9F5 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.57■□□□□ 0.88
TRIM40Q6P9F5 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM40Q6P9F5 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM40Q6P9F5 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.57■□□□□ 0.88
TRIM40Q6P9F5 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM40Q6P9F5 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM40Q6P9F5 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM40Q6P9F5 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.56■□□□□ 0.88
TRIM40Q6P9F5 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM40Q6P9F5 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM40Q6P9F5 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC20.56■□□□□ 0.88
TRIM40Q6P9F5 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.56■□□□□ 0.88
TRIM40Q6P9F5 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.56■□□□□ 0.88
TRIM40Q6P9F5 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.56■□□□□ 0.88
TRIM40Q6P9F5 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
TRIM40Q6P9F5 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM40Q6P9F5 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
TRIM40Q6P9F5 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM40Q6P9F5 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
TRIM40Q6P9F5 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM40Q6P9F5 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM40Q6P9F5 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM40Q6P9F5 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.55■□□□□ 0.88
TRIM40Q6P9F5 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM40Q6P9F5 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM40Q6P9F5 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM40Q6P9F5 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC20.55■□□□□ 0.88
TRIM40Q6P9F5 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.55■□□□□ 0.88
TRIM40Q6P9F5 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.55■□□□□ 0.88
TRIM40Q6P9F5 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM40Q6P9F5 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM40Q6P9F5 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
TRIM40Q6P9F5 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.55■□□□□ 0.88
TRIM40Q6P9F5 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM40Q6P9F5 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM40Q6P9F5 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
TRIM40Q6P9F5 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM40Q6P9F5 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.55■□□□□ 0.88
TRIM40Q6P9F5 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.54■□□□□ 0.88
TRIM40Q6P9F5 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM40Q6P9F5 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.54■□□□□ 0.88
TRIM40Q6P9F5 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM40Q6P9F5 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM40Q6P9F5 MIR572-201ENST00000384983 95 ntBASIC20.54■□□□□ 0.88
TRIM40Q6P9F5 AC105265.2-201ENST00000467189 838 ntBASIC20.54■□□□□ 0.88
TRIM40Q6P9F5 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.54■□□□□ 0.88
TRIM40Q6P9F5 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.54■□□□□ 0.88
TRIM40Q6P9F5 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM40Q6P9F5 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.54■□□□□ 0.88
TRIM40Q6P9F5 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.54■□□□□ 0.88
TRIM40Q6P9F5 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM40Q6P9F5 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM40Q6P9F5 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
TRIM40Q6P9F5 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM40Q6P9F5 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM40Q6P9F5 AL034346.1-201ENST00000568244 1277 ntBASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms