Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 AC105036.2-201ENST00000569468 176 ntBASIC24.99■■□□□ 1.59
HMGCS2P54868 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
HMGCS2P54868 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
HMGCS2P54868 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
HMGCS2P54868 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
HMGCS2P54868 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
HMGCS2P54868 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
HMGCS2P54868 APTR-203ENST00000430801 583 ntTSL 5 BASIC24.98■■□□□ 1.59
HMGCS2P54868 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC24.98■■□□□ 1.59
HMGCS2P54868 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
HMGCS2P54868 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
HMGCS2P54868 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC24.98■■□□□ 1.59
HMGCS2P54868 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC24.97■■□□□ 1.59
HMGCS2P54868 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC24.97■■□□□ 1.59
HMGCS2P54868 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC24.97■■□□□ 1.59
HMGCS2P54868 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC24.97■■□□□ 1.59
HMGCS2P54868 UQCRFS1P1-201ENST00000435169 820 ntBASIC24.97■■□□□ 1.59
HMGCS2P54868 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC24.97■■□□□ 1.59
HMGCS2P54868 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC24.97■■□□□ 1.59
HMGCS2P54868 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
HMGCS2P54868 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC24.97■■□□□ 1.59
HMGCS2P54868 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC24.97■■□□□ 1.59
HMGCS2P54868 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
HMGCS2P54868 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
HMGCS2P54868 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
HMGCS2P54868 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC24.96■■□□□ 1.59
HMGCS2P54868 AC069152.1-201ENST00000438030 544 ntBASIC24.96■■□□□ 1.59
HMGCS2P54868 AC098934.4-201ENST00000564127 592 ntBASIC24.96■■□□□ 1.59
HMGCS2P54868 AC133552.2-202ENST00000575694 574 ntBASIC24.96■■□□□ 1.59
HMGCS2P54868 MIR4651-201ENST00000582622 73 ntBASIC24.96■■□□□ 1.59
HMGCS2P54868 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC24.96■■□□□ 1.59
HMGCS2P54868 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC24.96■■□□□ 1.59
HMGCS2P54868 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
HMGCS2P54868 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
HMGCS2P54868 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC24.95■■□□□ 1.59
HMGCS2P54868 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
HMGCS2P54868 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
HMGCS2P54868 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC24.95■■□□□ 1.59
HMGCS2P54868 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC24.95■■□□□ 1.58
HMGCS2P54868 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
HMGCS2P54868 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC24.95■■□□□ 1.58
HMGCS2P54868 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC24.95■■□□□ 1.58
HMGCS2P54868 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
HMGCS2P54868 RGMA-211ENST00000557420 989 ntTSL 3 BASIC24.95■■□□□ 1.58
HMGCS2P54868 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC24.95■■□□□ 1.58
HMGCS2P54868 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC24.95■■□□□ 1.58
HMGCS2P54868 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC24.95■■□□□ 1.58
HMGCS2P54868 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC24.95■■□□□ 1.58
HMGCS2P54868 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC24.94■■□□□ 1.58
HMGCS2P54868 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC24.94■■□□□ 1.58
HMGCS2P54868 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC24.94■■□□□ 1.58
HMGCS2P54868 NAA20-201ENST00000310450 920 ntTSL 2 BASIC24.94■■□□□ 1.58
HMGCS2P54868 BMP1-204ENST00000397814 836 ntTSL 4 BASIC24.94■■□□□ 1.58
HMGCS2P54868 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC24.94■■□□□ 1.58
HMGCS2P54868 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
HMGCS2P54868 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC24.94■■□□□ 1.58
HMGCS2P54868 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC24.94■■□□□ 1.58
HMGCS2P54868 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
HMGCS2P54868 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
HMGCS2P54868 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
HMGCS2P54868 EEF1DP3-203ENST00000566025 782 ntBASIC24.93■■□□□ 1.58
HMGCS2P54868 AL034346.1-201ENST00000568244 1277 ntBASIC24.93■■□□□ 1.58
HMGCS2P54868 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC24.93■■□□□ 1.58
HMGCS2P54868 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
HMGCS2P54868 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC24.93■■□□□ 1.58
HMGCS2P54868 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
HMGCS2P54868 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC24.92■■□□□ 1.58
HMGCS2P54868 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC24.92■■□□□ 1.58
HMGCS2P54868 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
HMGCS2P54868 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC24.92■■□□□ 1.58
HMGCS2P54868 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC24.92■■□□□ 1.58
HMGCS2P54868 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
HMGCS2P54868 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
HMGCS2P54868 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC24.92■■□□□ 1.58
HMGCS2P54868 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC24.92■■□□□ 1.58
HMGCS2P54868 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
HMGCS2P54868 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC24.92■■□□□ 1.58
HMGCS2P54868 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
HMGCS2P54868 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC24.91■■□□□ 1.58
HMGCS2P54868 AP006587.3-201ENST00000525742 1516 ntBASIC24.91■■□□□ 1.58
HMGCS2P54868 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC24.91■■□□□ 1.58
HMGCS2P54868 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC24.91■■□□□ 1.58
HMGCS2P54868 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC24.91■■□□□ 1.58
HMGCS2P54868 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC24.91■■□□□ 1.58
HMGCS2P54868 AC013268.1-206ENST00000638368 961 ntBASIC24.91■■□□□ 1.58
HMGCS2P54868 AC112229.1-201ENST00000639295 961 ntBASIC24.91■■□□□ 1.58
HMGCS2P54868 AC133041.1-202ENST00000642053 222 ntBASIC24.91■■□□□ 1.58
HMGCS2P54868 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC24.91■■□□□ 1.58
HMGCS2P54868 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
HMGCS2P54868 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC24.9■■□□□ 1.58
HMGCS2P54868 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC24.9■■□□□ 1.58
HMGCS2P54868 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
HMGCS2P54868 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
HMGCS2P54868 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
HMGCS2P54868 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
HMGCS2P54868 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
HMGCS2P54868 TERF1P5-201ENST00000477545 1207 ntBASIC24.9■■□□□ 1.58
HMGCS2P54868 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC24.9■■□□□ 1.58
HMGCS2P54868 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
HMGCS2P54868 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC24.9■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms