Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 LCB5YLR260W 2064 nt3.9□□□□□ -1.78
UPF3P48412 KRE5YOR336W 4098 nt3.9□□□□□ -1.78
UPF3P48412 API2YDR525W 330 nt3.9□□□□□ -1.79
UPF3P48412 BUD25YER014C-A 462 nt3.9□□□□□ -1.79
UPF3P48412 GPP2YER062C 753 nt3.9□□□□□ -1.79
UPF3P48412 YGR064WYGR064W 369 nt3.9□□□□□ -1.79
UPF3P48412 RPS4BYHR203C 786 nt3.9□□□□□ -1.79
UPF3P48412 YVH1YIR026C 1095 nt3.9□□□□□ -1.79
UPF3P48412 ERP1YAR002C-A 660 nt3.9□□□□□ -1.79
UPF3P48412 URA4YLR420W 1095 nt3.9□□□□□ -1.79
UPF3P48412 DCP1YOL149W 696 nt3.9□□□□□ -1.79
UPF3P48412 ERV15YBR210W 429 nt3.9□□□□□ -1.79
UPF3P48412 PKP2YGL059W 1476 nt3.9□□□□□ -1.79
UPF3P48412 YDR034C-CYDR034C-C 1317 nt3.9□□□□□ -1.79
UPF3P48412 YLR410W-AYLR410W-A 1317 nt3.9□□□□□ -1.79
UPF3P48412 YPR003CYPR003C 2265 nt3.9□□□□□ -1.79
UPF3P48412 YCF1YDR135C 4548 nt3.89□□□□□ -1.79
UPF3P48412 GAL11YOL051W 3246 nt3.89□□□□□ -1.79
UPF3P48412 RPS29BYDL061C 171 nt3.89□□□□□ -1.79
UPF3P48412 QRI7YDL104C 1224 nt3.89□□□□□ -1.79
UPF3P48412 FMP41YNL168C 780 nt3.89□□□□□ -1.79
UPF3P48412 GDT1YBR187W 843 nt3.89□□□□□ -1.79
UPF3P48412 snR44snR44 211 nt3.89□□□□□ -1.79
UPF3P48412 MSK1YNL073W 1731 nt3.89□□□□□ -1.79
UPF3P48412 FRT2YAL028W 1587 nt3.89□□□□□ -1.79
UPF3P48412 HDA2YDR295C 2025 nt3.88□□□□□ -1.79
UPF3P48412 ACE2YLR131C 2313 nt3.88□□□□□ -1.79
UPF3P48412 VID28YIL017C 2766 nt3.88□□□□□ -1.79
UPF3P48412 HSP30YCR021C 999 nt3.88□□□□□ -1.79
UPF3P48412 YDR535CYDR535C 501 nt3.88□□□□□ -1.79
UPF3P48412 MPC3YGR243W 441 nt3.88□□□□□ -1.79
UPF3P48412 FSH1YHR049W 732 nt3.88□□□□□ -1.79
UPF3P48412 PBA1YLR199C 831 nt3.88□□□□□ -1.79
UPF3P48412 YML116W-AYML116W-A 303 nt3.88□□□□□ -1.79
UPF3P48412 YPL035CYPL035C 348 nt3.88□□□□□ -1.79
UPF3P48412 YPS7YDR349C 1791 nt3.88□□□□□ -1.79
UPF3P48412 RTG3YBL103C 1461 nt3.87□□□□□ -1.79
UPF3P48412 RGI1YER067W 486 nt3.87□□□□□ -1.79
UPF3P48412 YGR114CYGR114C 390 nt3.87□□□□□ -1.79
UPF3P48412 YBL010CYBL010C 843 nt3.87□□□□□ -1.79
UPF3P48412 ASC1YMR116C 960 nt3.87□□□□□ -1.79
UPF3P48412 MOH1YBL049W 417 nt3.87□□□□□ -1.79
UPF3P48412 RLP7YNL002C 969 nt3.87□□□□□ -1.79
UPF3P48412 NTA1YJR062C 1374 nt3.87□□□□□ -1.79
UPF3P48412 RPB2YOR151C 3675 nt3.86□□□□□ -1.79
UPF3P48412 NCR1YPL006W 3513 nt3.86□□□□□ -1.79
UPF3P48412 DBP3YGL078C 1572 nt3.86□□□□□ -1.79
UPF3P48412 TGL2YDR058C 981 nt3.86□□□□□ -1.79
UPF3P48412 IRC9YJL142C 393 nt3.86□□□□□ -1.79
UPF3P48412 EMC2YJR088C 879 nt3.86□□□□□ -1.79
UPF3P48412 TRI1YMR233W 681 nt3.86□□□□□ -1.79
UPF3P48412 APA1YCL050C 966 nt3.86□□□□□ -1.79
UPF3P48412 PIN4YBL051C 2007 nt3.86□□□□□ -1.79
UPF3P48412 MSM1YGR171C 1728 nt3.86□□□□□ -1.79
UPF3P48412 STE24YJR117W 1362 nt3.86□□□□□ -1.79
UPF3P48412 SLS1YLR139C 1932 nt3.85□□□□□ -1.79
UPF3P48412 VMA1YDL185W 3216 nt3.85□□□□□ -1.79
UPF3P48412 MNL1YHR204W 2391 nt3.85□□□□□ -1.79
UPF3P48412 IOC2YLR095C 2439 nt3.85□□□□□ -1.79
UPF3P48412 SPH1YLR313C 1593 nt3.85□□□□□ -1.79
UPF3P48412 YDR089WYDR089W 2610 nt3.85□□□□□ -1.79
UPF3P48412 YDL162CYDL162C 357 nt3.85□□□□□ -1.79
UPF3P48412 YDL228CYDL228C 642 nt3.85□□□□□ -1.79
UPF3P48412 YGR111WYGR111W 1203 nt3.85□□□□□ -1.79
UPF3P48412 CUP1-1YHR053C 186 nt3.85□□□□□ -1.79
UPF3P48412 CUP1-2YHR055C 186 nt3.85□□□□□ -1.79
UPF3P48412 YIL161WYIL161W 708 nt3.85□□□□□ -1.79
UPF3P48412 SNX4YJL036W 1272 nt3.85□□□□□ -1.79
UPF3P48412 YJR111CYJR111C 852 nt3.85□□□□□ -1.79
UPF3P48412 YLR285C-AYLR285C-A 171 nt3.85□□□□□ -1.79
UPF3P48412 INN1YNL152W 1230 nt3.85□□□□□ -1.79
UPF3P48412 GRX7YBR014C 612 nt3.85□□□□□ -1.79
UPF3P48412 ASI1YMR119W 1875 nt3.85□□□□□ -1.79
UPF3P48412 PRP31YGR091W 1485 nt3.85□□□□□ -1.79
UPF3P48412 PIB1YDR313C 861 nt3.84□□□□□ -1.79
UPF3P48412 HIM1YDR317W 1245 nt3.84□□□□□ -1.79
UPF3P48412 RPL24BYGR148C 468 nt3.84□□□□□ -1.79
UPF3P48412 RIM4YHL024W 2142 nt3.84□□□□□ -1.79
UPF3P48412 MMF1YIL051C 438 nt3.84□□□□□ -1.79
UPF3P48412 snR11snR11 258 nt3.84□□□□□ -1.79
UPF3P48412 snR17asnR17a 333 nt3.84□□□□□ -1.79
UPF3P48412 PIN3YPR154W 648 nt3.84□□□□□ -1.79
UPF3P48412 SEC2YNL272C 2280 nt3.84□□□□□ -1.79
UPF3P48412 STP1YDR463W 1560 nt3.84□□□□□ -1.8
UPF3P48412 TMA17YDL110C 453 nt3.83□□□□□ -1.8
UPF3P48412 PHM6YDR281C 315 nt3.83□□□□□ -1.8
UPF3P48412 APA2YDR530C 978 nt3.83□□□□□ -1.8
UPF3P48412 SMD3YLR147C 306 nt3.83□□□□□ -1.8
UPF3P48412 PBP2YBR233W 1242 nt3.83□□□□□ -1.8
UPF3P48412 CTP1YBR291C 900 nt3.83□□□□□ -1.8
UPF3P48412 ARP9YMR033W 1404 nt3.83□□□□□ -1.8
UPF3P48412 CHD1YER164W 4407 nt3.82□□□□□ -1.8
UPF3P48412 GCD2YGR083C 1956 nt3.82□□□□□ -1.8
UPF3P48412 GPI10YGL142C 1851 nt3.82□□□□□ -1.8
UPF3P48412 BAR1YIL015W 1764 nt3.82□□□□□ -1.8
UPF3P48412 SSU1YPL092W 1377 nt3.82□□□□□ -1.8
UPF3P48412 ECM11YDR446W 909 nt3.82□□□□□ -1.8
UPF3P48412 YEL010WYEL010W 351 nt3.82□□□□□ -1.8
UPF3P48412 YGL117WYGL117W 798 nt3.82□□□□□ -1.8
UPF3P48412 PEX14YGL153W 1026 nt3.82□□□□□ -1.8
Retrieved 100 of 7,029 protein–RNA pairs in 15.4 ms