Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RFC3P40938 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RFC3P40938 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.63■□□□□ 0.73
RFC3P40938 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RFC3P40938 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RFC3P40938 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC19.63■□□□□ 0.73
RFC3P40938 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.63■□□□□ 0.73
RFC3P40938 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.63■□□□□ 0.73
RFC3P40938 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.63■□□□□ 0.73
RFC3P40938 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.63■□□□□ 0.73
RFC3P40938 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RFC3P40938 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
RFC3P40938 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC19.63■□□□□ 0.73
RFC3P40938 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RFC3P40938 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
RFC3P40938 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RFC3P40938 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
RFC3P40938 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RFC3P40938 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.62■□□□□ 0.73
RFC3P40938 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.62■□□□□ 0.73
RFC3P40938 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RFC3P40938 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RFC3P40938 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RFC3P40938 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
RFC3P40938 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RFC3P40938 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
RFC3P40938 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
RFC3P40938 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
RFC3P40938 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
RFC3P40938 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
RFC3P40938 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
RFC3P40938 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC19.61■□□□□ 0.73
RFC3P40938 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC19.61■□□□□ 0.73
RFC3P40938 C9orf163-202ENST00000624034 2573 ntBASIC19.61■□□□□ 0.73
RFC3P40938 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
RFC3P40938 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC19.6■□□□□ 0.73
RFC3P40938 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
RFC3P40938 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
RFC3P40938 AP004607.7-201ENST00000527152 1677 ntBASIC19.6■□□□□ 0.73
RFC3P40938 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
RFC3P40938 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RFC3P40938 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
RFC3P40938 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.6■□□□□ 0.73
RFC3P40938 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
RFC3P40938 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
RFC3P40938 KRT19P1-201ENST00000405746 1186 ntBASIC19.6■□□□□ 0.73
RFC3P40938 AC006015.1-201ENST00000429970 570 ntBASIC19.6■□□□□ 0.73
RFC3P40938 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
RFC3P40938 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
RFC3P40938 AC080038.1-201ENST00000611274 1154 ntBASIC19.6■□□□□ 0.73
RFC3P40938 CPT2-209ENST00000636935 803 ntTSL 5 BASIC19.6■□□□□ 0.73
RFC3P40938 AL024507.2-201ENST00000606070 2574 ntBASIC19.6■□□□□ 0.73
RFC3P40938 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RFC3P40938 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RFC3P40938 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
RFC3P40938 AC009237.3-201ENST00000393279 1427 ntBASIC19.59■□□□□ 0.73
RFC3P40938 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.59■□□□□ 0.73
RFC3P40938 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
RFC3P40938 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
RFC3P40938 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
RFC3P40938 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
RFC3P40938 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RFC3P40938 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
RFC3P40938 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
RFC3P40938 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.59■□□□□ 0.73
RFC3P40938 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RFC3P40938 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RFC3P40938 OR7E47P-201ENST00000546390 1422 ntBASIC19.59■□□□□ 0.73
RFC3P40938 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RFC3P40938 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC19.59■□□□□ 0.73
RFC3P40938 LINC00526-201ENST00000581067 1875 ntBASIC19.58■□□□□ 0.73
RFC3P40938 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
RFC3P40938 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
RFC3P40938 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
RFC3P40938 ESRRAP2-201ENST00000418437 1549 ntBASIC19.58■□□□□ 0.73
RFC3P40938 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
RFC3P40938 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
RFC3P40938 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
RFC3P40938 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.58■□□□□ 0.72
RFC3P40938 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC19.58■□□□□ 0.72
RFC3P40938 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
RFC3P40938 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
RFC3P40938 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
RFC3P40938 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.58■□□□□ 0.72
RFC3P40938 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
RFC3P40938 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC19.58■□□□□ 0.72
RFC3P40938 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
RFC3P40938 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
RFC3P40938 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RFC3P40938 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RFC3P40938 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
RFC3P40938 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC19.57■□□□□ 0.72
RFC3P40938 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RFC3P40938 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RFC3P40938 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
RFC3P40938 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RFC3P40938 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.57■□□□□ 0.72
RFC3P40938 AC104187.1-201ENST00000607510 612 ntBASIC19.57■□□□□ 0.72
RFC3P40938 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RFC3P40938 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms