Protein–RNA interactions for Protein: P04049

RAF1, RAF proto-oncogene serine/threonine-protein kinase, humanhuman

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAF1P04049 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
RAF1P04049 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
RAF1P04049 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
RAF1P04049 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
RAF1P04049 RNF165-205ENST00000588679 2904 ntBASIC19.35■□□□□ 0.69
RAF1P04049 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC19.35■□□□□ 0.69
RAF1P04049 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
RAF1P04049 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RAF1P04049 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
RAF1P04049 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RAF1P04049 AICDA-202ENST00000537228 667 ntTSL 5 BASIC19.35■□□□□ 0.69
RAF1P04049 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
RAF1P04049 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.35■□□□□ 0.69
RAF1P04049 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
RAF1P04049 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
RAF1P04049 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RAF1P04049 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
RAF1P04049 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RAF1P04049 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
RAF1P04049 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
RAF1P04049 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC19.34■□□□□ 0.69
RAF1P04049 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RAF1P04049 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
RAF1P04049 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
RAF1P04049 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
RAF1P04049 TSPY26P-201ENST00000476365 1326 ntBASIC19.34■□□□□ 0.69
RAF1P04049 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RAF1P04049 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC19.34■□□□□ 0.69
RAF1P04049 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RAF1P04049 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC19.34■□□□□ 0.69
RAF1P04049 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC19.34■□□□□ 0.69
RAF1P04049 RAB43-208ENST00000615093 783 ntTSL 5 BASIC19.34■□□□□ 0.69
RAF1P04049 AL358852.1-201ENST00000623174 1268 ntBASIC19.34■□□□□ 0.69
RAF1P04049 AL031602.1-201ENST00000633169 911 ntBASIC19.34■□□□□ 0.69
RAF1P04049 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC19.34■□□□□ 0.69
RAF1P04049 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC19.34■□□□□ 0.69
RAF1P04049 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RAF1P04049 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC19.33■□□□□ 0.69
RAF1P04049 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
RAF1P04049 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
RAF1P04049 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC19.33■□□□□ 0.68
RAF1P04049 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
RAF1P04049 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC19.33■□□□□ 0.68
RAF1P04049 DUX4L2-201ENST00000561772 1275 ntBASIC19.33■□□□□ 0.68
RAF1P04049 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC19.33■□□□□ 0.68
RAF1P04049 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.33■□□□□ 0.68
RAF1P04049 DUX4L6-201ENST00000626483 1275 ntBASIC19.33■□□□□ 0.68
RAF1P04049 DUX4L1-201ENST00000627662 1275 ntBASIC19.33■□□□□ 0.68
RAF1P04049 DUX4L8-201ENST00000629013 1275 ntBASIC19.33■□□□□ 0.68
RAF1P04049 DUX4L3-201ENST00000630187 1275 ntBASIC19.33■□□□□ 0.68
RAF1P04049 DUX4L7-201ENST00000630678 1275 ntBASIC19.33■□□□□ 0.68
RAF1P04049 DUX4L5-201ENST00000630834 1275 ntBASIC19.33■□□□□ 0.68
RAF1P04049 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
RAF1P04049 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
RAF1P04049 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
RAF1P04049 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
RAF1P04049 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
RAF1P04049 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RAF1P04049 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RAF1P04049 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RAF1P04049 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RAF1P04049 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC19.32■□□□□ 0.68
RAF1P04049 AC087742.1-201ENST00000575880 1738 ntBASIC19.32■□□□□ 0.68
RAF1P04049 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
RAF1P04049 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
RAF1P04049 AC027612.3-201ENST00000413684 1047 ntBASIC19.32■□□□□ 0.68
RAF1P04049 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC19.32■□□□□ 0.68
RAF1P04049 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC19.32■□□□□ 0.68
RAF1P04049 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
RAF1P04049 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RAF1P04049 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
RAF1P04049 USF2-207ENST00000595068 1612 ntTSL 5 BASIC19.32■□□□□ 0.68
RAF1P04049 VGF-203ENST00000611537 1622 ntTSL 5 BASIC19.32■□□□□ 0.68
RAF1P04049 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
RAF1P04049 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RAF1P04049 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
RAF1P04049 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
RAF1P04049 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
RAF1P04049 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
RAF1P04049 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RAF1P04049 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19.31■□□□□ 0.68
RAF1P04049 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC19.31■□□□□ 0.68
RAF1P04049 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RAF1P04049 AC092667.1-201ENST00000434301 2586 ntBASIC19.31■□□□□ 0.68
RAF1P04049 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RAF1P04049 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
RAF1P04049 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
RAF1P04049 AC123595.1-201ENST00000440769 1046 ntBASIC19.31■□□□□ 0.68
RAF1P04049 NKILA-201ENST00000613231 537 ntTSL 4 BASIC19.31■□□□□ 0.68
RAF1P04049 AC092437.1-201ENST00000624794 1048 ntBASIC19.31■□□□□ 0.68
RAF1P04049 AC144652.1-201ENST00000609974 1624 ntBASIC19.31■□□□□ 0.68
RAF1P04049 AC080038.3-201ENST00000623346 1952 ntBASIC19.31■□□□□ 0.68
RAF1P04049 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RAF1P04049 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.31■□□□□ 0.68
RAF1P04049 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RAF1P04049 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RAF1P04049 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC19.3■□□□□ 0.68
RAF1P04049 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RAF1P04049 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RAF1P04049 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms