Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC19.59■□□□□ 0.73
SPTA1P02549 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SPTA1P02549 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.59■□□□□ 0.73
SPTA1P02549 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.58■□□□□ 0.73
SPTA1P02549 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SPTA1P02549 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SPTA1P02549 AC079630.1-202ENST00000618127 1840 ntBASIC19.58■□□□□ 0.73
SPTA1P02549 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SPTA1P02549 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SPTA1P02549 AL512625.2-201ENST00000417533 625 ntBASIC19.58■□□□□ 0.72
SPTA1P02549 AC073648.6-201ENST00000641589 218 ntBASIC19.58■□□□□ 0.72
SPTA1P02549 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SPTA1P02549 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SPTA1P02549 BX276092.2-201ENST00000417668 665 ntBASIC19.57■□□□□ 0.72
SPTA1P02549 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
SPTA1P02549 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC19.57■□□□□ 0.72
SPTA1P02549 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.57■□□□□ 0.72
SPTA1P02549 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC19.57■□□□□ 0.72
SPTA1P02549 AC138907.5-202ENST00000569484 235 ntBASIC19.57■□□□□ 0.72
SPTA1P02549 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SPTA1P02549 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
SPTA1P02549 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.57■□□□□ 0.72
SPTA1P02549 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SPTA1P02549 PEX7-202ENST00000367756 680 ntTSL 3 BASIC19.57■□□□□ 0.72
SPTA1P02549 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC19.57■□□□□ 0.72
SPTA1P02549 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC19.57■□□□□ 0.72
SPTA1P02549 AL445228.2-201ENST00000605589 952 ntBASIC19.57■□□□□ 0.72
SPTA1P02549 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SPTA1P02549 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SPTA1P02549 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SPTA1P02549 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
SPTA1P02549 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SPTA1P02549 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC19.56■□□□□ 0.72
SPTA1P02549 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC19.56■□□□□ 0.72
SPTA1P02549 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC19.56■□□□□ 0.72
SPTA1P02549 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SPTA1P02549 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SPTA1P02549 GAS7-202ENST00000396115 929 ntTSL 5 BASIC19.56■□□□□ 0.72
SPTA1P02549 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SPTA1P02549 AL162412.1-201ENST00000567129 965 ntBASIC19.56■□□□□ 0.72
SPTA1P02549 LINC01023-201ENST00000606054 436 ntBASIC19.56■□□□□ 0.72
SPTA1P02549 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC19.56■□□□□ 0.72
SPTA1P02549 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SPTA1P02549 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SPTA1P02549 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
SPTA1P02549 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.55■□□□□ 0.72
SPTA1P02549 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
SPTA1P02549 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
SPTA1P02549 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
SPTA1P02549 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.55■□□□□ 0.72
SPTA1P02549 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
SPTA1P02549 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.55■□□□□ 0.72
SPTA1P02549 DUSP8P5-201ENST00000422884 1815 ntBASIC19.55■□□□□ 0.72
SPTA1P02549 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SPTA1P02549 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC19.55■□□□□ 0.72
SPTA1P02549 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SPTA1P02549 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC19.55■□□□□ 0.72
SPTA1P02549 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC19.55■□□□□ 0.72
SPTA1P02549 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SPTA1P02549 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SPTA1P02549 AL353803.4-201ENST00000565882 1934 ntBASIC19.54■□□□□ 0.72
SPTA1P02549 AP003097.1-201ENST00000530657 1135 ntBASIC19.54■□□□□ 0.72
SPTA1P02549 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
SPTA1P02549 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SPTA1P02549 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SPTA1P02549 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SPTA1P02549 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SPTA1P02549 MIPEPP3-201ENST00000412105 444 ntBASIC19.54■□□□□ 0.72
SPTA1P02549 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SPTA1P02549 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.54■□□□□ 0.72
SPTA1P02549 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SPTA1P02549 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SPTA1P02549 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC19.53■□□□□ 0.72
SPTA1P02549 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.53■□□□□ 0.72
SPTA1P02549 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SPTA1P02549 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.53■□□□□ 0.72
SPTA1P02549 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
SPTA1P02549 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SPTA1P02549 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.53■□□□□ 0.72
SPTA1P02549 ABHD17AP6-201ENST00000458502 1044 ntBASIC19.53■□□□□ 0.72
SPTA1P02549 TERF1P5-201ENST00000477545 1207 ntBASIC19.53■□□□□ 0.72
SPTA1P02549 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.53■□□□□ 0.72
SPTA1P02549 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC19.53■□□□□ 0.72
SPTA1P02549 LINC00543-201ENST00000567234 1845 ntBASIC19.53■□□□□ 0.72
SPTA1P02549 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
SPTA1P02549 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SPTA1P02549 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SPTA1P02549 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC19.52■□□□□ 0.72
SPTA1P02549 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SPTA1P02549 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.52■□□□□ 0.72
SPTA1P02549 KRT18P20-201ENST00000548986 1279 ntBASIC19.52■□□□□ 0.72
SPTA1P02549 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC19.52■□□□□ 0.72
SPTA1P02549 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC19.52■□□□□ 0.72
SPTA1P02549 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC19.52■□□□□ 0.72
SPTA1P02549 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC19.52■□□□□ 0.72
SPTA1P02549 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SPTA1P02549 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.71
SPTA1P02549 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.71
SPTA1P02549 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.52■□□□□ 0.71
SPTA1P02549 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC19.52■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms