Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
SIX3O95343 Z98882.1-201ENST00000622160 2253 ntBASIC20.99■□□□□ 0.95
SIX3O95343 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.99■□□□□ 0.95
SIX3O95343 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
SIX3O95343 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SIX3O95343 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.99■□□□□ 0.95
SIX3O95343 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SIX3O95343 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.98■□□□□ 0.95
SIX3O95343 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.98■□□□□ 0.95
SIX3O95343 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC20.98■□□□□ 0.95
SIX3O95343 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SIX3O95343 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
SIX3O95343 DUX4L19-201ENST00000557448 1267 ntBASIC20.98■□□□□ 0.95
SIX3O95343 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.98■□□□□ 0.95
SIX3O95343 AC136469.2-201ENST00000623944 1028 ntBASIC20.98■□□□□ 0.95
SIX3O95343 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SIX3O95343 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
SIX3O95343 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SIX3O95343 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SIX3O95343 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.98■□□□□ 0.95
SIX3O95343 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SIX3O95343 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
SIX3O95343 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.97■□□□□ 0.95
SIX3O95343 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SIX3O95343 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
SIX3O95343 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.97■□□□□ 0.95
SIX3O95343 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SIX3O95343 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SIX3O95343 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.97■□□□□ 0.95
SIX3O95343 SLC47A1P1-202ENST00000449666 945 ntBASIC20.97■□□□□ 0.95
SIX3O95343 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SIX3O95343 OXCT2P1-201ENST00000447263 1535 ntBASIC20.97■□□□□ 0.95
SIX3O95343 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.97■□□□□ 0.95
SIX3O95343 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SIX3O95343 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SIX3O95343 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.97■□□□□ 0.95
SIX3O95343 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SIX3O95343 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SIX3O95343 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.96■□□□□ 0.95
SIX3O95343 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
SIX3O95343 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SIX3O95343 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.96■□□□□ 0.95
SIX3O95343 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.96■□□□□ 0.95
SIX3O95343 AC011298.3-201ENST00000615796 283 ntBASIC20.96■□□□□ 0.95
SIX3O95343 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.96■□□□□ 0.95
SIX3O95343 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.96■□□□□ 0.95
SIX3O95343 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
SIX3O95343 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SIX3O95343 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SIX3O95343 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.96■□□□□ 0.95
SIX3O95343 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
SIX3O95343 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SIX3O95343 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
SIX3O95343 AF106564.1-201ENST00000607058 2553 ntBASIC20.95■□□□□ 0.95
SIX3O95343 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SIX3O95343 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SIX3O95343 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
SIX3O95343 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SIX3O95343 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.95■□□□□ 0.94
SIX3O95343 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SIX3O95343 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.95■□□□□ 0.94
SIX3O95343 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.95■□□□□ 0.94
SIX3O95343 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SIX3O95343 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SIX3O95343 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SIX3O95343 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SIX3O95343 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
SIX3O95343 PKD1P6-201ENST00000343738 4769 ntBASIC20.94■□□□□ 0.94
SIX3O95343 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SIX3O95343 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
SIX3O95343 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
SIX3O95343 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SIX3O95343 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.94■□□□□ 0.94
SIX3O95343 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SIX3O95343 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.94■□□□□ 0.94
SIX3O95343 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.94■□□□□ 0.94
SIX3O95343 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.94■□□□□ 0.94
SIX3O95343 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SIX3O95343 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
SIX3O95343 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.94■□□□□ 0.94
SIX3O95343 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SIX3O95343 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SIX3O95343 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SIX3O95343 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SIX3O95343 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.93■□□□□ 0.94
SIX3O95343 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SIX3O95343 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SIX3O95343 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SIX3O95343 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
SIX3O95343 AL136116.3-201ENST00000402907 1138 ntBASIC20.93■□□□□ 0.94
SIX3O95343 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.93■□□□□ 0.94
SIX3O95343 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SIX3O95343 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.93■□□□□ 0.94
SIX3O95343 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SIX3O95343 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.93■□□□□ 0.94
SIX3O95343 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SIX3O95343 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SIX3O95343 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SIX3O95343 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.93■□□□□ 0.94
SIX3O95343 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms