Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AL121832.2-201ENST00000610979 668 ntBASIC21.05■□□□□ 0.96
SDC3O75056 AC231657.2-201ENST00000624556 255 ntBASIC21.05■□□□□ 0.96
SDC3O75056 GAMT-205ENST00000640762 751 ntTSL 5 BASIC21.05■□□□□ 0.96
SDC3O75056 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
SDC3O75056 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.05■□□□□ 0.96
SDC3O75056 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
SDC3O75056 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SDC3O75056 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SDC3O75056 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SDC3O75056 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SDC3O75056 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SDC3O75056 ABHD17AP1-201ENST00000358206 933 ntBASIC21.04■□□□□ 0.96
SDC3O75056 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
SDC3O75056 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.04■□□□□ 0.96
SDC3O75056 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC21.04■□□□□ 0.96
SDC3O75056 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SDC3O75056 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SDC3O75056 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SDC3O75056 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SDC3O75056 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SDC3O75056 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SDC3O75056 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SDC3O75056 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SDC3O75056 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC21.03■□□□□ 0.96
SDC3O75056 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC21.03■□□□□ 0.96
SDC3O75056 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC21.03■□□□□ 0.96
SDC3O75056 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SDC3O75056 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC21.03■□□□□ 0.96
SDC3O75056 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.03■□□□□ 0.96
SDC3O75056 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC21.03■□□□□ 0.96
SDC3O75056 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.03■□□□□ 0.96
SDC3O75056 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
SDC3O75056 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SDC3O75056 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SDC3O75056 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SDC3O75056 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
SDC3O75056 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SDC3O75056 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC21.02■□□□□ 0.96
SDC3O75056 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SDC3O75056 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC21.02■□□□□ 0.96
SDC3O75056 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC21.02■□□□□ 0.96
SDC3O75056 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC21.02■□□□□ 0.96
SDC3O75056 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
SDC3O75056 OR7E47P-201ENST00000546390 1422 ntBASIC21.02■□□□□ 0.96
SDC3O75056 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC21.02■□□□□ 0.96
SDC3O75056 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
SDC3O75056 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
SDC3O75056 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.95
SDC3O75056 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC21.02■□□□□ 0.95
SDC3O75056 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SDC3O75056 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SDC3O75056 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.01■□□□□ 0.95
SDC3O75056 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SDC3O75056 TSPY6P-201ENST00000448518 926 ntBASIC21.01■□□□□ 0.95
SDC3O75056 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
SDC3O75056 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
SDC3O75056 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC21.01■□□□□ 0.95
SDC3O75056 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SDC3O75056 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SDC3O75056 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SDC3O75056 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SDC3O75056 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
SDC3O75056 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC21■□□□□ 0.95
SDC3O75056 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
SDC3O75056 LINC00526-201ENST00000581067 1875 ntBASIC21■□□□□ 0.95
SDC3O75056 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
SDC3O75056 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SDC3O75056 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SDC3O75056 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.99■□□□□ 0.95
SDC3O75056 METTL15-202ENST00000403099 795 ntTSL 5 BASIC20.99■□□□□ 0.95
SDC3O75056 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC20.99■□□□□ 0.95
SDC3O75056 AC010141.2-201ENST00000452426 721 ntBASIC20.99■□□□□ 0.95
SDC3O75056 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC20.99■□□□□ 0.95
SDC3O75056 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.99■□□□□ 0.95
SDC3O75056 AL138781.1-201ENST00000566567 1274 ntBASIC20.99■□□□□ 0.95
SDC3O75056 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC20.99■□□□□ 0.95
SDC3O75056 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SDC3O75056 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SDC3O75056 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SDC3O75056 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.99■□□□□ 0.95
SDC3O75056 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC20.99■□□□□ 0.95
SDC3O75056 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
SDC3O75056 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.98■□□□□ 0.95
SDC3O75056 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SDC3O75056 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SDC3O75056 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SDC3O75056 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SDC3O75056 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.98■□□□□ 0.95
SDC3O75056 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.98■□□□□ 0.95
SDC3O75056 GUSBP6-202ENST00000438529 1198 ntBASIC20.98■□□□□ 0.95
SDC3O75056 CD99P1-205ENST00000527459 561 ntBASIC20.98■□□□□ 0.95
SDC3O75056 SLC7A5P2-201ENST00000553010 536 ntBASIC20.98■□□□□ 0.95
SDC3O75056 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SDC3O75056 TFG-210ENST00000620299 1289 ntTSL 5 BASIC20.98■□□□□ 0.95
SDC3O75056 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SDC3O75056 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20.98■□□□□ 0.95
SDC3O75056 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.97■□□□□ 0.95
SDC3O75056 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SDC3O75056 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SDC3O75056 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms