Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 DUSP8P5-201ENST00000422884 1815 ntBASIC27.07■■□□□ 1.92
NPHP1O15259 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC27.07■■□□□ 1.92
NPHP1O15259 AC069152.1-201ENST00000438030 544 ntBASIC27.07■■□□□ 1.92
NPHP1O15259 AC133041.1-202ENST00000642053 222 ntBASIC27.07■■□□□ 1.92
NPHP1O15259 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
NPHP1O15259 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC27.06■■□□□ 1.92
NPHP1O15259 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
NPHP1O15259 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
NPHP1O15259 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
NPHP1O15259 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC27.06■■□□□ 1.92
NPHP1O15259 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC27.06■■□□□ 1.92
NPHP1O15259 BMP1-204ENST00000397814 836 ntTSL 4 BASIC27.06■■□□□ 1.92
NPHP1O15259 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
NPHP1O15259 MIR4651-201ENST00000582622 73 ntBASIC27.06■■□□□ 1.92
NPHP1O15259 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC27.06■■□□□ 1.92
NPHP1O15259 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
NPHP1O15259 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC27.06■■□□□ 1.92
NPHP1O15259 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
NPHP1O15259 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC27.05■■□□□ 1.92
NPHP1O15259 FXN-202ENST00000396364 980 ntTSL 5 BASIC27.05■■□□□ 1.92
NPHP1O15259 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC27.05■■□□□ 1.92
NPHP1O15259 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
NPHP1O15259 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
NPHP1O15259 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
NPHP1O15259 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC27.04■■□□□ 1.92
NPHP1O15259 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
NPHP1O15259 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
NPHP1O15259 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC27.04■■□□□ 1.92
NPHP1O15259 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC27.04■■□□□ 1.92
NPHP1O15259 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC27.04■■□□□ 1.92
NPHP1O15259 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
NPHP1O15259 AC010536.3-201ENST00000620306 533 ntBASIC27.04■■□□□ 1.92
NPHP1O15259 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
NPHP1O15259 AC055733.4-201ENST00000638462 1354 ntBASIC27.04■■□□□ 1.92
NPHP1O15259 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC27.04■■□□□ 1.92
NPHP1O15259 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC27.04■■□□□ 1.92
NPHP1O15259 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC27.04■■□□□ 1.92
NPHP1O15259 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
NPHP1O15259 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
NPHP1O15259 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC27.03■■□□□ 1.92
NPHP1O15259 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
NPHP1O15259 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC27.03■■□□□ 1.92
NPHP1O15259 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
NPHP1O15259 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC27.03■■□□□ 1.92
NPHP1O15259 AP004607.7-201ENST00000527152 1677 ntBASIC27.03■■□□□ 1.92
NPHP1O15259 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC27.03■■□□□ 1.92
NPHP1O15259 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC27.03■■□□□ 1.92
NPHP1O15259 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC27.03■■□□□ 1.92
NPHP1O15259 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC27.03■■□□□ 1.92
NPHP1O15259 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC27.03■■□□□ 1.92
NPHP1O15259 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC27.03■■□□□ 1.92
NPHP1O15259 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC27.02■■□□□ 1.92
NPHP1O15259 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
NPHP1O15259 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
NPHP1O15259 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC27.02■■□□□ 1.92
NPHP1O15259 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
NPHP1O15259 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC27.02■■□□□ 1.92
NPHP1O15259 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC27.02■■□□□ 1.92
NPHP1O15259 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
NPHP1O15259 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC27.02■■□□□ 1.92
NPHP1O15259 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
NPHP1O15259 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC27.01■■□□□ 1.91
NPHP1O15259 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC27.01■■□□□ 1.91
NPHP1O15259 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
NPHP1O15259 CNN2P6-201ENST00000439038 900 ntBASIC27.01■■□□□ 1.91
NPHP1O15259 AC010141.2-201ENST00000452426 721 ntBASIC27.01■■□□□ 1.91
NPHP1O15259 TBCB-214ENST00000629269 413 ntTSL 5 BASIC27.01■■□□□ 1.91
NPHP1O15259 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
NPHP1O15259 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC27■■□□□ 1.91
NPHP1O15259 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC27■■□□□ 1.91
NPHP1O15259 LINC01960-201ENST00000563759 1884 ntBASIC27■■□□□ 1.91
NPHP1O15259 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC27■■□□□ 1.91
NPHP1O15259 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
NPHP1O15259 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC27■■□□□ 1.91
NPHP1O15259 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC27■■□□□ 1.91
NPHP1O15259 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC27■■□□□ 1.91
NPHP1O15259 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC27■■□□□ 1.91
NPHP1O15259 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC27■■□□□ 1.91
NPHP1O15259 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC26.99■■□□□ 1.91
NPHP1O15259 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
NPHP1O15259 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC26.99■■□□□ 1.91
NPHP1O15259 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
NPHP1O15259 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC26.99■■□□□ 1.91
NPHP1O15259 AC079089.2-201ENST00000531211 1277 ntBASIC26.99■■□□□ 1.91
NPHP1O15259 KRT18P20-201ENST00000548986 1279 ntBASIC26.99■■□□□ 1.91
NPHP1O15259 AC138907.5-202ENST00000569484 235 ntBASIC26.99■■□□□ 1.91
NPHP1O15259 AC133552.2-202ENST00000575694 574 ntBASIC26.99■■□□□ 1.91
NPHP1O15259 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
NPHP1O15259 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
NPHP1O15259 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC26.99■■□□□ 1.91
NPHP1O15259 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC26.99■■□□□ 1.91
NPHP1O15259 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
NPHP1O15259 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
NPHP1O15259 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC26.98■■□□□ 1.91
NPHP1O15259 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC26.98■■□□□ 1.91
NPHP1O15259 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC26.98■■□□□ 1.91
NPHP1O15259 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
NPHP1O15259 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
NPHP1O15259 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC26.98■■□□□ 1.91
NPHP1O15259 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms