Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC21.95■■□□□ 1.1
CBX4O00257 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
CBX4O00257 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CBX4O00257 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC21.95■■□□□ 1.1
CBX4O00257 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC21.95■■□□□ 1.1
CBX4O00257 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CBX4O00257 AL034346.1-201ENST00000568244 1277 ntBASIC21.95■■□□□ 1.1
CBX4O00257 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC21.95■■□□□ 1.1
CBX4O00257 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CBX4O00257 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC21.95■■□□□ 1.1
CBX4O00257 AC092437.1-201ENST00000624794 1048 ntBASIC21.95■■□□□ 1.1
CBX4O00257 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CBX4O00257 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CBX4O00257 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
CBX4O00257 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CBX4O00257 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CBX4O00257 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CBX4O00257 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.1
CBX4O00257 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
CBX4O00257 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CBX4O00257 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
CBX4O00257 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CBX4O00257 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.94■■□□□ 1.1
CBX4O00257 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CBX4O00257 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
CBX4O00257 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
CBX4O00257 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CBX4O00257 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC21.94■■□□□ 1.1
CBX4O00257 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
CBX4O00257 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC21.94■■□□□ 1.1
CBX4O00257 AL137784.2-201ENST00000607332 1000 ntBASIC21.94■■□□□ 1.1
CBX4O00257 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC21.94■■□□□ 1.1
CBX4O00257 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
CBX4O00257 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CBX4O00257 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.94■■□□□ 1.1
CBX4O00257 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.94■■□□□ 1.1
CBX4O00257 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CBX4O00257 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CBX4O00257 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CBX4O00257 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CBX4O00257 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CBX4O00257 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CBX4O00257 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CBX4O00257 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CBX4O00257 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
CBX4O00257 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CBX4O00257 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CBX4O00257 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
CBX4O00257 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC21.93■■□□□ 1.1
CBX4O00257 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21.93■■□□□ 1.1
CBX4O00257 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC21.93■■□□□ 1.1
CBX4O00257 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.93■■□□□ 1.1
CBX4O00257 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC21.93■■□□□ 1.1
CBX4O00257 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CBX4O00257 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC21.93■■□□□ 1.1
CBX4O00257 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
CBX4O00257 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC21.93■■□□□ 1.1
CBX4O00257 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CBX4O00257 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
CBX4O00257 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC21.93■■□□□ 1.1
CBX4O00257 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CBX4O00257 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.93■■□□□ 1.1
CBX4O00257 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CBX4O00257 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CBX4O00257 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.92■■□□□ 1.1
CBX4O00257 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
CBX4O00257 GUSBP5-202ENST00000510805 1989 ntBASIC21.92■■□□□ 1.1
CBX4O00257 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
CBX4O00257 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CBX4O00257 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CBX4O00257 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC21.92■■□□□ 1.1
CBX4O00257 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CBX4O00257 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.92■■□□□ 1.1
CBX4O00257 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
CBX4O00257 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.92■■□□□ 1.1
CBX4O00257 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.92■■□□□ 1.1
CBX4O00257 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CBX4O00257 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC21.91■■□□□ 1.1
CBX4O00257 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CBX4O00257 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.91■■□□□ 1.1
CBX4O00257 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CBX4O00257 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CBX4O00257 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CBX4O00257 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
CBX4O00257 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CBX4O00257 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC21.91■■□□□ 1.1
CBX4O00257 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC21.91■■□□□ 1.1
CBX4O00257 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CBX4O00257 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CBX4O00257 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.9■■□□□ 1.1
CBX4O00257 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CBX4O00257 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CBX4O00257 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CBX4O00257 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CBX4O00257 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CBX4O00257 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CBX4O00257 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CBX4O00257 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CBX4O00257 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CBX4O00257 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC21.9■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms