Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC22.52■■□□□ 1.2
PCDHA3Q9Y5H8 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
PCDHA3Q9Y5H8 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC22.52■■□□□ 1.2
PCDHA3Q9Y5H8 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PCDHA3Q9Y5H8 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PCDHA3Q9Y5H8 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
PCDHA3Q9Y5H8 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PCDHA3Q9Y5H8 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC22.52■■□□□ 1.2
PCDHA3Q9Y5H8 TRIR-205ENST00000592273 783 ntTSL 3 BASIC22.52■■□□□ 1.2
PCDHA3Q9Y5H8 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC22.52■■□□□ 1.2
PCDHA3Q9Y5H8 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC22.52■■□□□ 1.2
PCDHA3Q9Y5H8 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PCDHA3Q9Y5H8 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PCDHA3Q9Y5H8 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
PCDHA3Q9Y5H8 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC22.52■■□□□ 1.2
PCDHA3Q9Y5H8 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PCDHA3Q9Y5H8 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PCDHA3Q9Y5H8 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC22.51■■□□□ 1.19
PCDHA3Q9Y5H8 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PCDHA3Q9Y5H8 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC22.51■■□□□ 1.19
PCDHA3Q9Y5H8 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC22.51■■□□□ 1.19
PCDHA3Q9Y5H8 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC22.51■■□□□ 1.19
PCDHA3Q9Y5H8 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC22.51■■□□□ 1.19
PCDHA3Q9Y5H8 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
PCDHA3Q9Y5H8 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC22.51■■□□□ 1.19
PCDHA3Q9Y5H8 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
PCDHA3Q9Y5H8 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC22.5■■□□□ 1.19
PCDHA3Q9Y5H8 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
PCDHA3Q9Y5H8 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
PCDHA3Q9Y5H8 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
PCDHA3Q9Y5H8 AC010141.3-201ENST00000456659 717 ntBASIC22.5■■□□□ 1.19
PCDHA3Q9Y5H8 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
PCDHA3Q9Y5H8 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
PCDHA3Q9Y5H8 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC22.5■■□□□ 1.19
PCDHA3Q9Y5H8 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
PCDHA3Q9Y5H8 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
PCDHA3Q9Y5H8 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
PCDHA3Q9Y5H8 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
PCDHA3Q9Y5H8 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC22.49■■□□□ 1.19
PCDHA3Q9Y5H8 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
PCDHA3Q9Y5H8 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
PCDHA3Q9Y5H8 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC22.49■■□□□ 1.19
PCDHA3Q9Y5H8 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC22.49■■□□□ 1.19
PCDHA3Q9Y5H8 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC22.49■■□□□ 1.19
PCDHA3Q9Y5H8 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
PCDHA3Q9Y5H8 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC22.49■■□□□ 1.19
PCDHA3Q9Y5H8 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
PCDHA3Q9Y5H8 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC22.49■■□□□ 1.19
PCDHA3Q9Y5H8 AC010525.1-201ENST00000585559 441 ntBASIC22.49■■□□□ 1.19
PCDHA3Q9Y5H8 AC087239.1-201ENST00000622671 572 ntBASIC22.49■■□□□ 1.19
PCDHA3Q9Y5H8 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
PCDHA3Q9Y5H8 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC22.49■■□□□ 1.19
PCDHA3Q9Y5H8 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
PCDHA3Q9Y5H8 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC22.48■■□□□ 1.19
PCDHA3Q9Y5H8 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
PCDHA3Q9Y5H8 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC22.48■■□□□ 1.19
PCDHA3Q9Y5H8 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
PCDHA3Q9Y5H8 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC22.48■■□□□ 1.19
PCDHA3Q9Y5H8 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
PCDHA3Q9Y5H8 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
PCDHA3Q9Y5H8 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC22.48■■□□□ 1.19
PCDHA3Q9Y5H8 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC22.48■■□□□ 1.19
PCDHA3Q9Y5H8 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
PCDHA3Q9Y5H8 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC22.48■■□□□ 1.19
PCDHA3Q9Y5H8 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC22.48■■□□□ 1.19
PCDHA3Q9Y5H8 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
PCDHA3Q9Y5H8 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
PCDHA3Q9Y5H8 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
PCDHA3Q9Y5H8 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
PCDHA3Q9Y5H8 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
PCDHA3Q9Y5H8 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
PCDHA3Q9Y5H8 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC22.47■■□□□ 1.19
PCDHA3Q9Y5H8 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
PCDHA3Q9Y5H8 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
PCDHA3Q9Y5H8 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
PCDHA3Q9Y5H8 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
PCDHA3Q9Y5H8 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
PCDHA3Q9Y5H8 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
PCDHA3Q9Y5H8 OXCT2P1-201ENST00000447263 1535 ntBASIC22.47■■□□□ 1.19
PCDHA3Q9Y5H8 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC22.46■■□□□ 1.19
PCDHA3Q9Y5H8 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
PCDHA3Q9Y5H8 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
PCDHA3Q9Y5H8 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
PCDHA3Q9Y5H8 HES6-206ENST00000409574 738 ntTSL 2 BASIC22.46■■□□□ 1.19
PCDHA3Q9Y5H8 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
PCDHA3Q9Y5H8 FEM1AP4-201ENST00000443167 1987 ntBASIC22.46■■□□□ 1.19
PCDHA3Q9Y5H8 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
PCDHA3Q9Y5H8 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
PCDHA3Q9Y5H8 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC22.46■■□□□ 1.19
PCDHA3Q9Y5H8 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC22.46■■□□□ 1.19
PCDHA3Q9Y5H8 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC22.46■■□□□ 1.19
PCDHA3Q9Y5H8 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC22.46■■□□□ 1.19
PCDHA3Q9Y5H8 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
PCDHA3Q9Y5H8 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC22.45■■□□□ 1.19
PCDHA3Q9Y5H8 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
PCDHA3Q9Y5H8 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
PCDHA3Q9Y5H8 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
PCDHA3Q9Y5H8 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC22.45■■□□□ 1.18
PCDHA3Q9Y5H8 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC22.45■■□□□ 1.18
PCDHA3Q9Y5H8 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC22.45■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms