Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
PCDHB3Q9Y5E6 AP005435.1-201ENST00000529293 1178 ntBASIC21.04■□□□□ 0.96
PCDHB3Q9Y5E6 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC21.04■□□□□ 0.96
PCDHB3Q9Y5E6 AL358852.1-201ENST00000623174 1268 ntBASIC21.04■□□□□ 0.96
PCDHB3Q9Y5E6 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.04■□□□□ 0.96
PCDHB3Q9Y5E6 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PCDHB3Q9Y5E6 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
PCDHB3Q9Y5E6 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PCDHB3Q9Y5E6 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PCDHB3Q9Y5E6 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PCDHB3Q9Y5E6 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC21.03■□□□□ 0.96
PCDHB3Q9Y5E6 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PCDHB3Q9Y5E6 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PCDHB3Q9Y5E6 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PCDHB3Q9Y5E6 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC21.03■□□□□ 0.96
PCDHB3Q9Y5E6 AL353803.4-201ENST00000565882 1934 ntBASIC21.03■□□□□ 0.96
PCDHB3Q9Y5E6 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PCDHB3Q9Y5E6 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.03■□□□□ 0.96
PCDHB3Q9Y5E6 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.03■□□□□ 0.96
PCDHB3Q9Y5E6 BID-212ENST00000614949 1988 ntTSL 5 BASIC21.03■□□□□ 0.96
PCDHB3Q9Y5E6 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
PCDHB3Q9Y5E6 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PCDHB3Q9Y5E6 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
PCDHB3Q9Y5E6 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.02■□□□□ 0.96
PCDHB3Q9Y5E6 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
PCDHB3Q9Y5E6 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC21.02■□□□□ 0.96
PCDHB3Q9Y5E6 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
PCDHB3Q9Y5E6 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.02■□□□□ 0.96
PCDHB3Q9Y5E6 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PCDHB3Q9Y5E6 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PCDHB3Q9Y5E6 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PCDHB3Q9Y5E6 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PCDHB3Q9Y5E6 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
PCDHB3Q9Y5E6 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PCDHB3Q9Y5E6 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC21.02■□□□□ 0.96
PCDHB3Q9Y5E6 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC21.02■□□□□ 0.96
PCDHB3Q9Y5E6 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PCDHB3Q9Y5E6 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC21.02■□□□□ 0.96
PCDHB3Q9Y5E6 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.02■□□□□ 0.96
PCDHB3Q9Y5E6 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
PCDHB3Q9Y5E6 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC21.02■□□□□ 0.96
PCDHB3Q9Y5E6 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
PCDHB3Q9Y5E6 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC21.02■□□□□ 0.95
PCDHB3Q9Y5E6 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.02■□□□□ 0.95
PCDHB3Q9Y5E6 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC21.02■□□□□ 0.95
PCDHB3Q9Y5E6 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.01■□□□□ 0.95
PCDHB3Q9Y5E6 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PCDHB3Q9Y5E6 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PCDHB3Q9Y5E6 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
PCDHB3Q9Y5E6 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC21.01■□□□□ 0.95
PCDHB3Q9Y5E6 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC21.01■□□□□ 0.95
PCDHB3Q9Y5E6 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC21.01■□□□□ 0.95
PCDHB3Q9Y5E6 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC21.01■□□□□ 0.95
PCDHB3Q9Y5E6 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PCDHB3Q9Y5E6 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PCDHB3Q9Y5E6 AL137784.2-201ENST00000607332 1000 ntBASIC21.01■□□□□ 0.95
PCDHB3Q9Y5E6 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
PCDHB3Q9Y5E6 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.01■□□□□ 0.95
PCDHB3Q9Y5E6 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
PCDHB3Q9Y5E6 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PCDHB3Q9Y5E6 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
PCDHB3Q9Y5E6 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21■□□□□ 0.95
PCDHB3Q9Y5E6 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC21■□□□□ 0.95
PCDHB3Q9Y5E6 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
PCDHB3Q9Y5E6 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC21■□□□□ 0.95
PCDHB3Q9Y5E6 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC21■□□□□ 0.95
PCDHB3Q9Y5E6 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC21■□□□□ 0.95
PCDHB3Q9Y5E6 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PCDHB3Q9Y5E6 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC21■□□□□ 0.95
PCDHB3Q9Y5E6 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC21■□□□□ 0.95
PCDHB3Q9Y5E6 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
PCDHB3Q9Y5E6 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC21■□□□□ 0.95
PCDHB3Q9Y5E6 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC21■□□□□ 0.95
PCDHB3Q9Y5E6 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PCDHB3Q9Y5E6 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
PCDHB3Q9Y5E6 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PCDHB3Q9Y5E6 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21■□□□□ 0.95
PCDHB3Q9Y5E6 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
PCDHB3Q9Y5E6 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PCDHB3Q9Y5E6 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
PCDHB3Q9Y5E6 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.99■□□□□ 0.95
PCDHB3Q9Y5E6 AC027612.3-201ENST00000413684 1047 ntBASIC20.99■□□□□ 0.95
PCDHB3Q9Y5E6 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC20.99■□□□□ 0.95
PCDHB3Q9Y5E6 AL354811.1-201ENST00000610286 706 ntBASIC20.99■□□□□ 0.95
PCDHB3Q9Y5E6 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PCDHB3Q9Y5E6 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
PCDHB3Q9Y5E6 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
PCDHB3Q9Y5E6 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
PCDHB3Q9Y5E6 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCDHB3Q9Y5E6 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCDHB3Q9Y5E6 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.98■□□□□ 0.95
PCDHB3Q9Y5E6 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
PCDHB3Q9Y5E6 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCDHB3Q9Y5E6 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.98■□□□□ 0.95
PCDHB3Q9Y5E6 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCDHB3Q9Y5E6 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PCDHB3Q9Y5E6 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCDHB3Q9Y5E6 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PCDHB3Q9Y5E6 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PCDHB3Q9Y5E6 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms