Protein–RNA interactions for Protein: Q9Y4C1

KDM3A, Lysine-specific demethylase 3A, humanhuman

Predictions only

Length 1,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KDM3AQ9Y4C1 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC24.3■■□□□ 1.48
KDM3AQ9Y4C1 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC24.3■■□□□ 1.48
KDM3AQ9Y4C1 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
KDM3AQ9Y4C1 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC24.3■■□□□ 1.48
KDM3AQ9Y4C1 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
KDM3AQ9Y4C1 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
KDM3AQ9Y4C1 OR7E47P-201ENST00000546390 1422 ntBASIC24.3■■□□□ 1.48
KDM3AQ9Y4C1 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
KDM3AQ9Y4C1 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
KDM3AQ9Y4C1 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC24.3■■□□□ 1.48
KDM3AQ9Y4C1 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC24.3■■□□□ 1.48
KDM3AQ9Y4C1 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
KDM3AQ9Y4C1 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC24.3■■□□□ 1.48
KDM3AQ9Y4C1 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC24.29■■□□□ 1.48
KDM3AQ9Y4C1 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
KDM3AQ9Y4C1 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
KDM3AQ9Y4C1 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
KDM3AQ9Y4C1 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
KDM3AQ9Y4C1 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
KDM3AQ9Y4C1 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
KDM3AQ9Y4C1 LINC02228-203ENST00000641970 1355 ntBASIC24.29■■□□□ 1.48
KDM3AQ9Y4C1 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
KDM3AQ9Y4C1 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC24.29■■□□□ 1.48
KDM3AQ9Y4C1 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC24.29■■□□□ 1.48
KDM3AQ9Y4C1 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
KDM3AQ9Y4C1 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
KDM3AQ9Y4C1 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC24.28■■□□□ 1.48
KDM3AQ9Y4C1 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
KDM3AQ9Y4C1 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
KDM3AQ9Y4C1 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
KDM3AQ9Y4C1 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
KDM3AQ9Y4C1 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC24.28■■□□□ 1.48
KDM3AQ9Y4C1 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
KDM3AQ9Y4C1 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
KDM3AQ9Y4C1 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC24.28■■□□□ 1.48
KDM3AQ9Y4C1 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC24.28■■□□□ 1.48
KDM3AQ9Y4C1 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC24.28■■□□□ 1.48
KDM3AQ9Y4C1 AC105233.4-201ENST00000642045 216 ntBASIC24.28■■□□□ 1.48
KDM3AQ9Y4C1 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC24.28■■□□□ 1.48
KDM3AQ9Y4C1 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
KDM3AQ9Y4C1 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
KDM3AQ9Y4C1 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC24.27■■□□□ 1.48
KDM3AQ9Y4C1 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
KDM3AQ9Y4C1 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
KDM3AQ9Y4C1 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC24.27■■□□□ 1.48
KDM3AQ9Y4C1 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
KDM3AQ9Y4C1 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
KDM3AQ9Y4C1 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
KDM3AQ9Y4C1 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC24.27■■□□□ 1.48
KDM3AQ9Y4C1 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
KDM3AQ9Y4C1 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
KDM3AQ9Y4C1 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC24.27■■□□□ 1.48
KDM3AQ9Y4C1 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
KDM3AQ9Y4C1 KRT18P14-201ENST00000534205 1250 ntBASIC24.27■■□□□ 1.48
KDM3AQ9Y4C1 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC24.27■■□□□ 1.48
KDM3AQ9Y4C1 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC24.27■■□□□ 1.48
KDM3AQ9Y4C1 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
KDM3AQ9Y4C1 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC24.27■■□□□ 1.47
KDM3AQ9Y4C1 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC24.27■■□□□ 1.47
KDM3AQ9Y4C1 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
KDM3AQ9Y4C1 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
KDM3AQ9Y4C1 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
KDM3AQ9Y4C1 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC24.26■■□□□ 1.47
KDM3AQ9Y4C1 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC24.26■■□□□ 1.47
KDM3AQ9Y4C1 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC24.26■■□□□ 1.47
KDM3AQ9Y4C1 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
KDM3AQ9Y4C1 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC24.26■■□□□ 1.47
KDM3AQ9Y4C1 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC24.26■■□□□ 1.47
KDM3AQ9Y4C1 AC079834.2-201ENST00000609776 1949 ntBASIC24.26■■□□□ 1.47
KDM3AQ9Y4C1 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC24.26■■□□□ 1.47
KDM3AQ9Y4C1 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC24.26■■□□□ 1.47
KDM3AQ9Y4C1 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
KDM3AQ9Y4C1 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
KDM3AQ9Y4C1 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
KDM3AQ9Y4C1 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
KDM3AQ9Y4C1 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
KDM3AQ9Y4C1 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
KDM3AQ9Y4C1 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
KDM3AQ9Y4C1 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
KDM3AQ9Y4C1 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
KDM3AQ9Y4C1 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
KDM3AQ9Y4C1 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC24.25■■□□□ 1.47
KDM3AQ9Y4C1 NT5C3AP1-201ENST00000394500 1012 ntBASIC24.25■■□□□ 1.47
KDM3AQ9Y4C1 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC24.25■■□□□ 1.47
KDM3AQ9Y4C1 IKBKGP1-201ENST00000612193 1073 ntBASIC24.25■■□□□ 1.47
KDM3AQ9Y4C1 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
KDM3AQ9Y4C1 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC24.25■■□□□ 1.47
KDM3AQ9Y4C1 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC24.25■■□□□ 1.47
KDM3AQ9Y4C1 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
KDM3AQ9Y4C1 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC24.25■■□□□ 1.47
KDM3AQ9Y4C1 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC24.24■■□□□ 1.47
KDM3AQ9Y4C1 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC24.24■■□□□ 1.47
KDM3AQ9Y4C1 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC24.24■■□□□ 1.47
KDM3AQ9Y4C1 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
KDM3AQ9Y4C1 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
KDM3AQ9Y4C1 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC24.24■■□□□ 1.47
KDM3AQ9Y4C1 MFF-208ENST00000409616 1247 ntTSL 5 BASIC24.24■■□□□ 1.47
KDM3AQ9Y4C1 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
KDM3AQ9Y4C1 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
KDM3AQ9Y4C1 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC24.24■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms