Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HIF3AQ9Y2N7 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC19.44■□□□□ 0.7
HIF3AQ9Y2N7 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HIF3AQ9Y2N7 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
HIF3AQ9Y2N7 AC010141.3-201ENST00000456659 717 ntBASIC19.44■□□□□ 0.7
HIF3AQ9Y2N7 AC010525.1-201ENST00000585559 441 ntBASIC19.44■□□□□ 0.7
HIF3AQ9Y2N7 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC19.44■□□□□ 0.7
HIF3AQ9Y2N7 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HIF3AQ9Y2N7 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC19.44■□□□□ 0.7
HIF3AQ9Y2N7 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
HIF3AQ9Y2N7 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HIF3AQ9Y2N7 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HIF3AQ9Y2N7 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HIF3AQ9Y2N7 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
HIF3AQ9Y2N7 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
HIF3AQ9Y2N7 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.43■□□□□ 0.7
HIF3AQ9Y2N7 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HIF3AQ9Y2N7 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
HIF3AQ9Y2N7 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC19.43■□□□□ 0.7
HIF3AQ9Y2N7 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HIF3AQ9Y2N7 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC19.43■□□□□ 0.7
HIF3AQ9Y2N7 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
HIF3AQ9Y2N7 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
HIF3AQ9Y2N7 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC19.43■□□□□ 0.7
HIF3AQ9Y2N7 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
HIF3AQ9Y2N7 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.42■□□□□ 0.7
HIF3AQ9Y2N7 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HIF3AQ9Y2N7 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC19.42■□□□□ 0.7
HIF3AQ9Y2N7 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC19.42■□□□□ 0.7
HIF3AQ9Y2N7 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC19.42■□□□□ 0.7
HIF3AQ9Y2N7 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HIF3AQ9Y2N7 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC19.42■□□□□ 0.7
HIF3AQ9Y2N7 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HIF3AQ9Y2N7 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
HIF3AQ9Y2N7 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HIF3AQ9Y2N7 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HIF3AQ9Y2N7 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
HIF3AQ9Y2N7 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
HIF3AQ9Y2N7 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
HIF3AQ9Y2N7 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
HIF3AQ9Y2N7 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC19.41■□□□□ 0.7
HIF3AQ9Y2N7 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HIF3AQ9Y2N7 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HIF3AQ9Y2N7 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC19.41■□□□□ 0.7
HIF3AQ9Y2N7 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC19.41■□□□□ 0.7
HIF3AQ9Y2N7 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HIF3AQ9Y2N7 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HIF3AQ9Y2N7 AC244015.2-201ENST00000616358 1861 ntBASIC19.41■□□□□ 0.7
HIF3AQ9Y2N7 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC19.41■□□□□ 0.7
HIF3AQ9Y2N7 OXCT2P1-201ENST00000447263 1535 ntBASIC19.41■□□□□ 0.7
HIF3AQ9Y2N7 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.4■□□□□ 0.7
HIF3AQ9Y2N7 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HIF3AQ9Y2N7 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HIF3AQ9Y2N7 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
HIF3AQ9Y2N7 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HIF3AQ9Y2N7 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
HIF3AQ9Y2N7 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
HIF3AQ9Y2N7 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC19.4■□□□□ 0.7
HIF3AQ9Y2N7 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC19.4■□□□□ 0.7
HIF3AQ9Y2N7 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HIF3AQ9Y2N7 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HIF3AQ9Y2N7 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HIF3AQ9Y2N7 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
HIF3AQ9Y2N7 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HIF3AQ9Y2N7 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HIF3AQ9Y2N7 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
HIF3AQ9Y2N7 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
HIF3AQ9Y2N7 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC19.4■□□□□ 0.7
HIF3AQ9Y2N7 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HIF3AQ9Y2N7 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HIF3AQ9Y2N7 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HIF3AQ9Y2N7 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
HIF3AQ9Y2N7 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
HIF3AQ9Y2N7 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
HIF3AQ9Y2N7 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC19.39■□□□□ 0.69
HIF3AQ9Y2N7 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HIF3AQ9Y2N7 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HIF3AQ9Y2N7 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC19.39■□□□□ 0.69
HIF3AQ9Y2N7 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC19.39■□□□□ 0.69
HIF3AQ9Y2N7 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HIF3AQ9Y2N7 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HIF3AQ9Y2N7 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HIF3AQ9Y2N7 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.39■□□□□ 0.69
HIF3AQ9Y2N7 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
HIF3AQ9Y2N7 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HIF3AQ9Y2N7 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HIF3AQ9Y2N7 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
HIF3AQ9Y2N7 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HIF3AQ9Y2N7 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC19.38■□□□□ 0.69
HIF3AQ9Y2N7 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HIF3AQ9Y2N7 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HIF3AQ9Y2N7 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
HIF3AQ9Y2N7 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
HIF3AQ9Y2N7 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC19.38■□□□□ 0.69
HIF3AQ9Y2N7 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HIF3AQ9Y2N7 AP005435.1-201ENST00000529293 1178 ntBASIC19.38■□□□□ 0.69
HIF3AQ9Y2N7 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC19.38■□□□□ 0.69
HIF3AQ9Y2N7 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC19.38■□□□□ 0.69
HIF3AQ9Y2N7 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HIF3AQ9Y2N7 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms