Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
NOD1Q9Y239 AC055733.4-201ENST00000638462 1354 ntBASIC23.83■■□□□ 1.41
NOD1Q9Y239 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
NOD1Q9Y239 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC23.83■■□□□ 1.41
NOD1Q9Y239 METTL15-202ENST00000403099 795 ntTSL 5 BASIC23.83■■□□□ 1.41
NOD1Q9Y239 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC23.83■■□□□ 1.41
NOD1Q9Y239 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC23.83■■□□□ 1.41
NOD1Q9Y239 AC079089.2-201ENST00000531211 1277 ntBASIC23.83■■□□□ 1.41
NOD1Q9Y239 SLC7A5P2-201ENST00000553010 536 ntBASIC23.83■■□□□ 1.41
NOD1Q9Y239 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC23.83■■□□□ 1.41
NOD1Q9Y239 TFG-210ENST00000620299 1289 ntTSL 5 BASIC23.83■■□□□ 1.41
NOD1Q9Y239 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
NOD1Q9Y239 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
NOD1Q9Y239 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
NOD1Q9Y239 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NOD1Q9Y239 ANOS2P-203ENST00000472227 1816 ntBASIC23.82■■□□□ 1.4
NOD1Q9Y239 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
NOD1Q9Y239 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC23.82■■□□□ 1.4
NOD1Q9Y239 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
NOD1Q9Y239 TSPY20P-201ENST00000450910 630 ntBASIC23.82■■□□□ 1.4
NOD1Q9Y239 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC23.82■■□□□ 1.4
NOD1Q9Y239 KRT18P6-201ENST00000555540 1265 ntBASIC23.82■■□□□ 1.4
NOD1Q9Y239 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NOD1Q9Y239 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC23.82■■□□□ 1.4
NOD1Q9Y239 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
NOD1Q9Y239 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
NOD1Q9Y239 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC23.82■■□□□ 1.4
NOD1Q9Y239 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
NOD1Q9Y239 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
NOD1Q9Y239 AP004607.7-201ENST00000527152 1677 ntBASIC23.81■■□□□ 1.4
NOD1Q9Y239 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
NOD1Q9Y239 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC23.81■■□□□ 1.4
NOD1Q9Y239 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC23.81■■□□□ 1.4
NOD1Q9Y239 AL138781.1-201ENST00000566567 1274 ntBASIC23.81■■□□□ 1.4
NOD1Q9Y239 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NOD1Q9Y239 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NOD1Q9Y239 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NOD1Q9Y239 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
NOD1Q9Y239 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
NOD1Q9Y239 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
NOD1Q9Y239 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC23.8■■□□□ 1.4
NOD1Q9Y239 GUSBP6-202ENST00000438529 1198 ntBASIC23.8■■□□□ 1.4
NOD1Q9Y239 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
NOD1Q9Y239 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC23.8■■□□□ 1.4
NOD1Q9Y239 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC23.8■■□□□ 1.4
NOD1Q9Y239 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC23.8■■□□□ 1.4
NOD1Q9Y239 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC23.8■■□□□ 1.4
NOD1Q9Y239 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
NOD1Q9Y239 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
NOD1Q9Y239 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
NOD1Q9Y239 AF201337.1-201ENST00000520239 748 ntBASIC23.79■■□□□ 1.4
NOD1Q9Y239 RGMA-211ENST00000557420 989 ntTSL 3 BASIC23.79■■□□□ 1.4
NOD1Q9Y239 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC23.79■■□□□ 1.4
NOD1Q9Y239 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC23.79■■□□□ 1.4
NOD1Q9Y239 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
NOD1Q9Y239 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
NOD1Q9Y239 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
NOD1Q9Y239 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
NOD1Q9Y239 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC23.79■■□□□ 1.4
NOD1Q9Y239 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
NOD1Q9Y239 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NOD1Q9Y239 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NOD1Q9Y239 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC23.78■■□□□ 1.4
NOD1Q9Y239 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
NOD1Q9Y239 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NOD1Q9Y239 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC23.78■■□□□ 1.4
NOD1Q9Y239 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
NOD1Q9Y239 AC010141.2-201ENST00000452426 721 ntBASIC23.78■■□□□ 1.4
NOD1Q9Y239 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC23.78■■□□□ 1.4
NOD1Q9Y239 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NOD1Q9Y239 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
NOD1Q9Y239 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
NOD1Q9Y239 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
NOD1Q9Y239 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
NOD1Q9Y239 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC23.77■■□□□ 1.4
NOD1Q9Y239 KLF13-207ENST00000560473 489 ntTSL 3 BASIC23.77■■□□□ 1.4
NOD1Q9Y239 AC105036.2-201ENST00000569468 176 ntBASIC23.77■■□□□ 1.4
NOD1Q9Y239 AC010536.3-201ENST00000620306 533 ntBASIC23.77■■□□□ 1.4
NOD1Q9Y239 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
NOD1Q9Y239 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
NOD1Q9Y239 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
NOD1Q9Y239 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
NOD1Q9Y239 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
NOD1Q9Y239 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
NOD1Q9Y239 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
NOD1Q9Y239 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
NOD1Q9Y239 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC23.76■■□□□ 1.39
NOD1Q9Y239 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
NOD1Q9Y239 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
NOD1Q9Y239 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC23.76■■□□□ 1.39
NOD1Q9Y239 KRT18P20-201ENST00000548986 1279 ntBASIC23.76■■□□□ 1.39
NOD1Q9Y239 AC138907.5-202ENST00000569484 235 ntBASIC23.76■■□□□ 1.39
NOD1Q9Y239 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
NOD1Q9Y239 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
NOD1Q9Y239 AC092068.2-201ENST00000590491 1708 ntBASIC23.76■■□□□ 1.39
NOD1Q9Y239 OR7E47P-201ENST00000546390 1422 ntBASIC23.76■■□□□ 1.39
NOD1Q9Y239 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
NOD1Q9Y239 BMP1-204ENST00000397814 836 ntTSL 4 BASIC23.75■■□□□ 1.39
NOD1Q9Y239 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC23.75■■□□□ 1.39
NOD1Q9Y239 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC23.75■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms