Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
USE1Q9NZ43 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
USE1Q9NZ43 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
USE1Q9NZ43 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USE1Q9NZ43 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USE1Q9NZ43 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
USE1Q9NZ43 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC19.97■□□□□ 0.79
USE1Q9NZ43 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
USE1Q9NZ43 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
USE1Q9NZ43 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USE1Q9NZ43 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC19.97■□□□□ 0.79
USE1Q9NZ43 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USE1Q9NZ43 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USE1Q9NZ43 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.96■□□□□ 0.79
USE1Q9NZ43 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.96■□□□□ 0.79
USE1Q9NZ43 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.96■□□□□ 0.79
USE1Q9NZ43 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USE1Q9NZ43 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
USE1Q9NZ43 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USE1Q9NZ43 ASB1-202ENST00000409297 878 ntTSL 5 BASIC19.96■□□□□ 0.79
USE1Q9NZ43 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC19.96■□□□□ 0.79
USE1Q9NZ43 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC19.96■□□□□ 0.79
USE1Q9NZ43 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC19.96■□□□□ 0.79
USE1Q9NZ43 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USE1Q9NZ43 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USE1Q9NZ43 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USE1Q9NZ43 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
USE1Q9NZ43 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
USE1Q9NZ43 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
USE1Q9NZ43 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
USE1Q9NZ43 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.95■□□□□ 0.78
USE1Q9NZ43 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.95■□□□□ 0.78
USE1Q9NZ43 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USE1Q9NZ43 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USE1Q9NZ43 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USE1Q9NZ43 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USE1Q9NZ43 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USE1Q9NZ43 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
USE1Q9NZ43 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USE1Q9NZ43 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
USE1Q9NZ43 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.94■□□□□ 0.78
USE1Q9NZ43 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
USE1Q9NZ43 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USE1Q9NZ43 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.94■□□□□ 0.78
USE1Q9NZ43 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USE1Q9NZ43 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC19.94■□□□□ 0.78
USE1Q9NZ43 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
USE1Q9NZ43 SNX5-217ENST00000606557 1087 ntBASIC19.94■□□□□ 0.78
USE1Q9NZ43 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
USE1Q9NZ43 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
USE1Q9NZ43 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USE1Q9NZ43 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
USE1Q9NZ43 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.94■□□□□ 0.78
USE1Q9NZ43 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
USE1Q9NZ43 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
USE1Q9NZ43 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC19.93■□□□□ 0.78
USE1Q9NZ43 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USE1Q9NZ43 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USE1Q9NZ43 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
USE1Q9NZ43 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
USE1Q9NZ43 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
USE1Q9NZ43 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.93■□□□□ 0.78
USE1Q9NZ43 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC19.93■□□□□ 0.78
USE1Q9NZ43 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USE1Q9NZ43 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC19.93■□□□□ 0.78
USE1Q9NZ43 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
USE1Q9NZ43 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC19.93■□□□□ 0.78
USE1Q9NZ43 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USE1Q9NZ43 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
USE1Q9NZ43 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
USE1Q9NZ43 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.93■□□□□ 0.78
USE1Q9NZ43 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC19.93■□□□□ 0.78
USE1Q9NZ43 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
USE1Q9NZ43 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
USE1Q9NZ43 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USE1Q9NZ43 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USE1Q9NZ43 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.92■□□□□ 0.78
USE1Q9NZ43 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
USE1Q9NZ43 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
USE1Q9NZ43 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC19.92■□□□□ 0.78
USE1Q9NZ43 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC19.92■□□□□ 0.78
USE1Q9NZ43 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
USE1Q9NZ43 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
USE1Q9NZ43 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC19.92■□□□□ 0.78
USE1Q9NZ43 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USE1Q9NZ43 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
USE1Q9NZ43 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USE1Q9NZ43 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USE1Q9NZ43 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC19.91■□□□□ 0.78
USE1Q9NZ43 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USE1Q9NZ43 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
USE1Q9NZ43 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USE1Q9NZ43 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.91■□□□□ 0.78
USE1Q9NZ43 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
USE1Q9NZ43 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
USE1Q9NZ43 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
USE1Q9NZ43 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC19.91■□□□□ 0.78
USE1Q9NZ43 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USE1Q9NZ43 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USE1Q9NZ43 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms