Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
CLN6Q9NWW5 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.6■□□□□ 0.73
CLN6Q9NWW5 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CLN6Q9NWW5 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLN6Q9NWW5 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLN6Q9NWW5 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC19.6■□□□□ 0.73
CLN6Q9NWW5 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
CLN6Q9NWW5 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLN6Q9NWW5 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLN6Q9NWW5 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.6■□□□□ 0.73
CLN6Q9NWW5 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.59■□□□□ 0.73
CLN6Q9NWW5 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLN6Q9NWW5 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.59■□□□□ 0.73
CLN6Q9NWW5 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.59■□□□□ 0.73
CLN6Q9NWW5 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CLN6Q9NWW5 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLN6Q9NWW5 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CLN6Q9NWW5 AC103834.1-201ENST00000520383 144 ntBASIC19.59■□□□□ 0.73
CLN6Q9NWW5 AC137630.3-201ENST00000607245 391 ntBASIC19.59■□□□□ 0.73
CLN6Q9NWW5 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLN6Q9NWW5 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CLN6Q9NWW5 AF106564.1-201ENST00000607058 2553 ntBASIC19.59■□□□□ 0.73
CLN6Q9NWW5 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC19.59■□□□□ 0.73
CLN6Q9NWW5 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLN6Q9NWW5 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLN6Q9NWW5 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLN6Q9NWW5 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLN6Q9NWW5 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLN6Q9NWW5 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLN6Q9NWW5 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLN6Q9NWW5 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CLN6Q9NWW5 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.73
CLN6Q9NWW5 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CLN6Q9NWW5 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CLN6Q9NWW5 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC19.58■□□□□ 0.73
CLN6Q9NWW5 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.58■□□□□ 0.73
CLN6Q9NWW5 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.58■□□□□ 0.73
CLN6Q9NWW5 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CLN6Q9NWW5 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CLN6Q9NWW5 SENP5-202ENST00000419026 973 ntTSL 3 BASIC19.58■□□□□ 0.72
CLN6Q9NWW5 LINC01521-201ENST00000504184 1943 ntBASIC19.58■□□□□ 0.72
CLN6Q9NWW5 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CLN6Q9NWW5 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC19.58■□□□□ 0.72
CLN6Q9NWW5 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CLN6Q9NWW5 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLN6Q9NWW5 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.57■□□□□ 0.72
CLN6Q9NWW5 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLN6Q9NWW5 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC19.57■□□□□ 0.72
CLN6Q9NWW5 AC103724.3-201ENST00000564481 992 ntBASIC19.57■□□□□ 0.72
CLN6Q9NWW5 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC19.57■□□□□ 0.72
CLN6Q9NWW5 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CLN6Q9NWW5 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC19.57■□□□□ 0.72
CLN6Q9NWW5 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC19.57■□□□□ 0.72
CLN6Q9NWW5 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLN6Q9NWW5 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC19.57■□□□□ 0.72
CLN6Q9NWW5 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLN6Q9NWW5 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLN6Q9NWW5 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLN6Q9NWW5 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
CLN6Q9NWW5 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLN6Q9NWW5 YBX1P4-201ENST00000392794 808 ntBASIC19.56■□□□□ 0.72
CLN6Q9NWW5 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CLN6Q9NWW5 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC19.56■□□□□ 0.72
CLN6Q9NWW5 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLN6Q9NWW5 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLN6Q9NWW5 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLN6Q9NWW5 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.56■□□□□ 0.72
CLN6Q9NWW5 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CLN6Q9NWW5 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLN6Q9NWW5 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CLN6Q9NWW5 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLN6Q9NWW5 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLN6Q9NWW5 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CLN6Q9NWW5 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
CLN6Q9NWW5 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.55■□□□□ 0.72
CLN6Q9NWW5 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CLN6Q9NWW5 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLN6Q9NWW5 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC19.55■□□□□ 0.72
CLN6Q9NWW5 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLN6Q9NWW5 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CLN6Q9NWW5 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLN6Q9NWW5 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLN6Q9NWW5 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC19.55■□□□□ 0.72
CLN6Q9NWW5 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC19.55■□□□□ 0.72
CLN6Q9NWW5 TK2-216ENST00000564917 1156 ntTSL 3 BASIC19.55■□□□□ 0.72
CLN6Q9NWW5 MIR6722-201ENST00000617286 78 ntBASIC19.55■□□□□ 0.72
CLN6Q9NWW5 AC012354.3-201ENST00000623734 483 ntBASIC19.55■□□□□ 0.72
CLN6Q9NWW5 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLN6Q9NWW5 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CLN6Q9NWW5 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CLN6Q9NWW5 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLN6Q9NWW5 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLN6Q9NWW5 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC19.55■□□□□ 0.72
CLN6Q9NWW5 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLN6Q9NWW5 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC19.55■□□□□ 0.72
CLN6Q9NWW5 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLN6Q9NWW5 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLN6Q9NWW5 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLN6Q9NWW5 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.54■□□□□ 0.72
CLN6Q9NWW5 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms