Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
TRIM39Q9HCM9 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
TRIM39Q9HCM9 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
TRIM39Q9HCM9 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.33■■□□□ 1
TRIM39Q9HCM9 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
TRIM39Q9HCM9 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.33■■□□□ 1
TRIM39Q9HCM9 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.32■■□□□ 1
TRIM39Q9HCM9 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM39Q9HCM9 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM39Q9HCM9 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM39Q9HCM9 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC21.32■■□□□ 1
TRIM39Q9HCM9 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM39Q9HCM9 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM39Q9HCM9 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM39Q9HCM9 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM39Q9HCM9 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.31■■□□□ 1
TRIM39Q9HCM9 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM39Q9HCM9 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC21.31■■□□□ 1
TRIM39Q9HCM9 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC21.31■■□□□ 1
TRIM39Q9HCM9 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC21.31■■□□□ 1
TRIM39Q9HCM9 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.31■■□□□ 1
TRIM39Q9HCM9 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC21.31■■□□□ 1
TRIM39Q9HCM9 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC21.31■■□□□ 1
TRIM39Q9HCM9 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
TRIM39Q9HCM9 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM39Q9HCM9 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM39Q9HCM9 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
TRIM39Q9HCM9 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM39Q9HCM9 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.3■■□□□ 1
TRIM39Q9HCM9 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRIM39Q9HCM9 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRIM39Q9HCM9 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
TRIM39Q9HCM9 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
TRIM39Q9HCM9 AC009237.3-201ENST00000393279 1427 ntBASIC21.3■■□□□ 1
TRIM39Q9HCM9 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
TRIM39Q9HCM9 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC21.3■■□□□ 1
TRIM39Q9HCM9 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
TRIM39Q9HCM9 AP004607.7-201ENST00000527152 1677 ntBASIC21.3■■□□□ 1
TRIM39Q9HCM9 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.3■■□□□ 1
TRIM39Q9HCM9 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRIM39Q9HCM9 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRIM39Q9HCM9 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
TRIM39Q9HCM9 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
TRIM39Q9HCM9 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
TRIM39Q9HCM9 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC21.29■■□□□ 1
TRIM39Q9HCM9 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
TRIM39Q9HCM9 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC21.29■■□□□ 1
TRIM39Q9HCM9 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC21.29■■□□□ 1
TRIM39Q9HCM9 AC034268.1-201ENST00000441047 882 ntBASIC21.29■■□□□ 1
TRIM39Q9HCM9 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRIM39Q9HCM9 AL034346.1-201ENST00000568244 1277 ntBASIC21.29■■□□□ 1
TRIM39Q9HCM9 CCDC92B-201ENST00000575506 885 ntBASIC21.29■■□□□ 1
TRIM39Q9HCM9 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC21.29■■□□□ 1
TRIM39Q9HCM9 TERF1P2-201ENST00000583350 1212 ntBASIC21.29■■□□□ 1
TRIM39Q9HCM9 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
TRIM39Q9HCM9 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
TRIM39Q9HCM9 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
TRIM39Q9HCM9 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC21.28■■□□□ 1
TRIM39Q9HCM9 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM39Q9HCM9 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
TRIM39Q9HCM9 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM39Q9HCM9 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
TRIM39Q9HCM9 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC21.28■■□□□ 1
TRIM39Q9HCM9 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.28■■□□□ 1
TRIM39Q9HCM9 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM39Q9HCM9 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
TRIM39Q9HCM9 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.28■■□□□ 1
TRIM39Q9HCM9 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.28■■□□□ 1
TRIM39Q9HCM9 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
TRIM39Q9HCM9 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.28■■□□□ 1
TRIM39Q9HCM9 AC080038.3-201ENST00000623346 1952 ntBASIC21.28■■□□□ 1
TRIM39Q9HCM9 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.28■■□□□ 1
TRIM39Q9HCM9 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM39Q9HCM9 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM39Q9HCM9 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRIM39Q9HCM9 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC21.27■■□□□ 1
TRIM39Q9HCM9 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.27■■□□□ 1
TRIM39Q9HCM9 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
TRIM39Q9HCM9 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC21.27■■□□□ 1
TRIM39Q9HCM9 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC21.27■■□□□ 1
TRIM39Q9HCM9 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC21.27■■□□□ 1
TRIM39Q9HCM9 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC21.27■■□□□ 1
TRIM39Q9HCM9 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC21.27■■□□□ 1
TRIM39Q9HCM9 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC21.27■■□□□ 1
TRIM39Q9HCM9 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC21.27■■□□□ 1
TRIM39Q9HCM9 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
TRIM39Q9HCM9 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM39Q9HCM9 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC21.26■□□□□ 0.99
TRIM39Q9HCM9 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM39Q9HCM9 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM39Q9HCM9 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC21.26■□□□□ 0.99
TRIM39Q9HCM9 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM39Q9HCM9 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC21.26■□□□□ 0.99
TRIM39Q9HCM9 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM39Q9HCM9 KRT18P14-201ENST00000534205 1250 ntBASIC21.26■□□□□ 0.99
TRIM39Q9HCM9 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM39Q9HCM9 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM39Q9HCM9 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM39Q9HCM9 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM39Q9HCM9 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms