Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 IRS3P-201ENST00000223076 1006 ntBASIC19.62■□□□□ 0.73
NPAS1Q99742 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NPAS1Q99742 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPAS1Q99742 LHPP-203ENST00000392757 840 ntTSL 3 BASIC19.62■□□□□ 0.73
NPAS1Q99742 MIR6084-201ENST00000622012 110 ntBASIC19.62■□□□□ 0.73
NPAS1Q99742 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPAS1Q99742 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPAS1Q99742 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPAS1Q99742 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC19.61■□□□□ 0.73
NPAS1Q99742 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
NPAS1Q99742 AC242852.2-201ENST00000615738 1807 ntBASIC19.61■□□□□ 0.73
NPAS1Q99742 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
NPAS1Q99742 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC19.61■□□□□ 0.73
NPAS1Q99742 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NPAS1Q99742 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC19.61■□□□□ 0.73
NPAS1Q99742 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.61■□□□□ 0.73
NPAS1Q99742 AC105233.4-201ENST00000642045 216 ntBASIC19.61■□□□□ 0.73
NPAS1Q99742 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.61■□□□□ 0.73
NPAS1Q99742 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NPAS1Q99742 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPAS1Q99742 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPAS1Q99742 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
NPAS1Q99742 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
NPAS1Q99742 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.61■□□□□ 0.73
NPAS1Q99742 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPAS1Q99742 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPAS1Q99742 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
NPAS1Q99742 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPAS1Q99742 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
NPAS1Q99742 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC19.6■□□□□ 0.73
NPAS1Q99742 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
NPAS1Q99742 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPAS1Q99742 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPAS1Q99742 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
NPAS1Q99742 JTB-203ENST00000368589 1216 ntTSL 2 BASIC19.6■□□□□ 0.73
NPAS1Q99742 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
NPAS1Q99742 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC19.6■□□□□ 0.73
NPAS1Q99742 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC19.6■□□□□ 0.73
NPAS1Q99742 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC19.6■□□□□ 0.73
NPAS1Q99742 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.6■□□□□ 0.73
NPAS1Q99742 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
NPAS1Q99742 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC19.6■□□□□ 0.73
NPAS1Q99742 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC19.6■□□□□ 0.73
NPAS1Q99742 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
NPAS1Q99742 STK25-234ENST00000535007 2459 ntTSL 2 BASIC19.6■□□□□ 0.73
NPAS1Q99742 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC19.59■□□□□ 0.73
NPAS1Q99742 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.59■□□□□ 0.73
NPAS1Q99742 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPAS1Q99742 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPAS1Q99742 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC19.59■□□□□ 0.73
NPAS1Q99742 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.59■□□□□ 0.73
NPAS1Q99742 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC19.59■□□□□ 0.73
NPAS1Q99742 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NPAS1Q99742 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
NPAS1Q99742 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
NPAS1Q99742 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NPAS1Q99742 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC19.59■□□□□ 0.73
NPAS1Q99742 LGR4-203ENST00000480977 492 ntTSL 2 BASIC19.59■□□□□ 0.73
NPAS1Q99742 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPAS1Q99742 SLC25A24-204ENST00000569674 2357 ntBASIC19.59■□□□□ 0.73
NPAS1Q99742 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPAS1Q99742 ECEL1P1-201ENST00000373592 1742 ntBASIC19.59■□□□□ 0.73
NPAS1Q99742 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NPAS1Q99742 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
NPAS1Q99742 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC19.58■□□□□ 0.73
NPAS1Q99742 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
NPAS1Q99742 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC19.58■□□□□ 0.72
NPAS1Q99742 AC012414.1-201ENST00000556676 535 ntBASIC19.58■□□□□ 0.72
NPAS1Q99742 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC19.58■□□□□ 0.72
NPAS1Q99742 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC19.58■□□□□ 0.72
NPAS1Q99742 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.58■□□□□ 0.72
NPAS1Q99742 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC19.58■□□□□ 0.72
NPAS1Q99742 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC19.58■□□□□ 0.72
NPAS1Q99742 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
NPAS1Q99742 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
NPAS1Q99742 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
NPAS1Q99742 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
NPAS1Q99742 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
NPAS1Q99742 ASL-203ENST00000380839 1765 ntTSL 5 BASIC19.57■□□□□ 0.72
NPAS1Q99742 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
NPAS1Q99742 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
NPAS1Q99742 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NPAS1Q99742 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NPAS1Q99742 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NPAS1Q99742 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NPAS1Q99742 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC19.57■□□□□ 0.72
NPAS1Q99742 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NPAS1Q99742 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NPAS1Q99742 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC19.57■□□□□ 0.72
NPAS1Q99742 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NPAS1Q99742 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
NPAS1Q99742 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
NPAS1Q99742 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
NPAS1Q99742 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NPAS1Q99742 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
NPAS1Q99742 OR7E47P-201ENST00000546390 1422 ntBASIC19.57■□□□□ 0.72
NPAS1Q99742 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NPAS1Q99742 PXK-203ENST00000383715 1756 ntTSL 5 BASIC19.57■□□□□ 0.72
NPAS1Q99742 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NPAS1Q99742 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms