Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC21.58■■□□□ 1.05
VPS13AQ96RL7 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC21.58■■□□□ 1.05
VPS13AQ96RL7 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC21.58■■□□□ 1.05
VPS13AQ96RL7 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VPS13AQ96RL7 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
VPS13AQ96RL7 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
VPS13AQ96RL7 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
VPS13AQ96RL7 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC21.58■■□□□ 1.05
VPS13AQ96RL7 AP001160.3-201ENST00000601484 763 ntBASIC21.58■■□□□ 1.05
VPS13AQ96RL7 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VPS13AQ96RL7 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21.58■■□□□ 1.05
VPS13AQ96RL7 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VPS13AQ96RL7 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
VPS13AQ96RL7 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
VPS13AQ96RL7 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
VPS13AQ96RL7 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
VPS13AQ96RL7 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
VPS13AQ96RL7 AC005224.4-201ENST00000583262 1652 ntBASIC21.57■■□□□ 1.04
VPS13AQ96RL7 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
VPS13AQ96RL7 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
VPS13AQ96RL7 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
VPS13AQ96RL7 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC21.57■■□□□ 1.04
VPS13AQ96RL7 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC21.57■■□□□ 1.04
VPS13AQ96RL7 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC21.57■■□□□ 1.04
VPS13AQ96RL7 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC21.57■■□□□ 1.04
VPS13AQ96RL7 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
VPS13AQ96RL7 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC21.57■■□□□ 1.04
VPS13AQ96RL7 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VPS13AQ96RL7 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC21.57■■□□□ 1.04
VPS13AQ96RL7 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC21.57■■□□□ 1.04
VPS13AQ96RL7 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC21.57■■□□□ 1.04
VPS13AQ96RL7 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC21.56■■□□□ 1.04
VPS13AQ96RL7 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC21.56■■□□□ 1.04
VPS13AQ96RL7 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC21.56■■□□□ 1.04
VPS13AQ96RL7 AL353803.4-201ENST00000565882 1934 ntBASIC21.56■■□□□ 1.04
VPS13AQ96RL7 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC21.56■■□□□ 1.04
VPS13AQ96RL7 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS13AQ96RL7 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.56■■□□□ 1.04
VPS13AQ96RL7 RCN1P1-201ENST00000400413 996 ntBASIC21.56■■□□□ 1.04
VPS13AQ96RL7 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC21.56■■□□□ 1.04
VPS13AQ96RL7 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC21.56■■□□□ 1.04
VPS13AQ96RL7 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS13AQ96RL7 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS13AQ96RL7 DUSP8P4-201ENST00000399538 1761 ntBASIC21.56■■□□□ 1.04
VPS13AQ96RL7 AL161729.1-201ENST00000604104 1402 ntBASIC21.56■■□□□ 1.04
VPS13AQ96RL7 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC21.56■■□□□ 1.04
VPS13AQ96RL7 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VPS13AQ96RL7 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
VPS13AQ96RL7 BET1L-204ENST00000410108 637 ntTSL 3 BASIC21.56■■□□□ 1.04
VPS13AQ96RL7 RPS20-210ENST00000523936 899 ntTSL 2 BASIC21.56■■□□□ 1.04
VPS13AQ96RL7 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS13AQ96RL7 AC093787.1-201ENST00000450396 207 ntBASIC21.55■■□□□ 1.04
VPS13AQ96RL7 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
VPS13AQ96RL7 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VPS13AQ96RL7 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VPS13AQ96RL7 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VPS13AQ96RL7 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
VPS13AQ96RL7 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VPS13AQ96RL7 ABHD17AP6-201ENST00000458502 1044 ntBASIC21.55■■□□□ 1.04
VPS13AQ96RL7 BX088651.1-201ENST00000540551 451 ntBASIC21.55■■□□□ 1.04
VPS13AQ96RL7 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS13AQ96RL7 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS13AQ96RL7 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS13AQ96RL7 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS13AQ96RL7 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS13AQ96RL7 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC21.54■■□□□ 1.04
VPS13AQ96RL7 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC21.54■■□□□ 1.04
VPS13AQ96RL7 AC079630.1-202ENST00000618127 1840 ntBASIC21.54■■□□□ 1.04
VPS13AQ96RL7 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC21.54■■□□□ 1.04
VPS13AQ96RL7 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
VPS13AQ96RL7 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
VPS13AQ96RL7 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS13AQ96RL7 BX276092.2-201ENST00000417668 665 ntBASIC21.54■■□□□ 1.04
VPS13AQ96RL7 PLLP-204ENST00000569059 665 ntTSL 3 BASIC21.54■■□□□ 1.04
VPS13AQ96RL7 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS13AQ96RL7 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS13AQ96RL7 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC21.53■■□□□ 1.04
VPS13AQ96RL7 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC21.53■■□□□ 1.04
VPS13AQ96RL7 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC21.53■■□□□ 1.04
VPS13AQ96RL7 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC21.53■■□□□ 1.04
VPS13AQ96RL7 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS13AQ96RL7 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC21.52■■□□□ 1.04
VPS13AQ96RL7 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC21.52■■□□□ 1.04
VPS13AQ96RL7 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS13AQ96RL7 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC21.52■■□□□ 1.04
VPS13AQ96RL7 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS13AQ96RL7 MDFI-202ENST00000373050 809 ntTSL 2 BASIC21.52■■□□□ 1.04
VPS13AQ96RL7 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC21.52■■□□□ 1.04
VPS13AQ96RL7 AC091874.3-201ENST00000512672 1195 ntBASIC21.52■■□□□ 1.04
VPS13AQ96RL7 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS13AQ96RL7 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.52■■□□□ 1.04
VPS13AQ96RL7 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.03
VPS13AQ96RL7 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC21.52■■□□□ 1.03
VPS13AQ96RL7 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS13AQ96RL7 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS13AQ96RL7 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.51■■□□□ 1.03
VPS13AQ96RL7 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS13AQ96RL7 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS13AQ96RL7 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC21.51■■□□□ 1.03
VPS13AQ96RL7 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms